PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G083000.1.p
Common NameSb01g007480, SORBIDRAFT_01g007480
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 425aa    MW: 45195 Da    PI: 7.249
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G083000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.95e-29194250259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dgy+WrKYGqK+ k++e prsYY+Ct  gCpvkk vers  d+ + eitY+g+Hnh+
  Sobic.001G083000.1.p 194 KDGYSWRKYGQKQLKDAESPRSYYKCTRDGCPVKKVVERSF-DGFIKEITYKGRHNHP 250
                           8****************************************.***************8 PP
2WRKY96.71.6e-30317375159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg++ prsYY+C   +C+v+k++er+++dp++v +tY+g+Hnh+
  Sobic.001G083000.1.p 317 LDDGYRWRKYGQKVVKGNHRPRSYYKCIADKCNVRKQIERASTDPRCVLTTYTGRHNHD 375
                           59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.94188252IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-26190252IPR003657WRKY domain
SuperFamilySSF1182901.57E-23192252IPR003657WRKY domain
SMARTSM007745.9E-31193251IPR003657WRKY domain
PfamPF031062.2E-22194250IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.9E-32302377IPR003657WRKY domain
SuperFamilySSF1182901.7E-26310377IPR003657WRKY domain
PROSITE profilePS5081133.258312377IPR003657WRKY domain
SMARTSM007742.1E-32317376IPR003657WRKY domain
PfamPF031061.6E-22318375IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDDRRGRRDA MGQRPFASAA QGQERVFDGG GGGGGGGPGP AFGGEFDQGS SSLMALLGAG  60
GAVSSQPPPP TWGVEEVTAA PAINLVPQSL FSMANYAPPP PSYQQPTSFA PSPLGGRVDP  120
YPPYLVADQP PQWPPPRPAA ADSSMPHSNF TVFFPRNPYD HDMQLRATAL FGGSSGLHAH  180
ALPPPPPAIE QPAKDGYSWR KYGQKQLKDA ESPRSYYKCT RDGCPVKKVV ERSFDGFIKE  240
ITYKGRHNHP RPQERGLAGG GNDALAAAEE DVDGPSDDDD DDVDGAPGRA ADGVVAGQRV  300
VKKPKIILQT PSEVDLLDDG YRWRKYGQKV VKGNHRPRSY YKCIADKCNV RKQIERASTD  360
PRCVLTTYTG RHNHDPPGQG NEAAAATVAA GGSSADPGPP SRNTASGSGA FQENWGARQL  420
KEEC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-30195377877Probable WRKY transcription factor 4
2lex_A2e-30195377877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.199450.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G083000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3638032e-79AK363803.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2019A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466419.10.0probable WRKY transcription factor 58
SwissprotQ9ZQ709e-65WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLC5X0660.0C5X066_SORBI; Uncharacterized protein
STRINGSb01g007480.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28753236
Representative plantOGRP1583233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.28e-52WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]