PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G082600.4.p | ||||||||
Common Name | Sb01g007440, SORBIDRAFT_01g007440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 231aa MW: 23910.9 Da PI: 7.8978 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.9 | 5.7e-06 | 174 | 219 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 a n+r r RR+r+ +++ L++l+ + +K + a++L +A YI+ L Sobic.001G082600.4.p 174 ATNKRPRVRRERLGERIIALQQLVSPF-----GKSDTASVLHEALGYIRFL 219 569***********************8.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.455 | 170 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.19E-11 | 175 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.5E-7 | 176 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.45E-6 | 176 | 224 | No hit | No description |
SMART | SM00353 | 1.3E-5 | 176 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MVKEEEIMAE AGGGRGGYMD LLGLGEDDYL LCLSPSSYFA SSVVSATTTS ATTTAAASSP 60 TCASYLDMAP AYHHMLSFAG QDQQYHGDGV LGFQYYGAGD HAIPAAVPQK SSPTTECSSI 120 SSMSSSPPAT AISAVSCSKP QAFKKKGSRS SEQRKAASAA AAAPAAPAAA GGGATNKRPR 180 VRRERLGERI IALQQLVSPF GKSDTASVLH EALGYIRFLH DQVQVRCLLV * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G082600.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466417.1 | 1e-160 | transcription factor bHLH123 isoform X1 | ||||
TrEMBL | A0A1Z5S562 | 1e-166 | A0A1Z5S562_SORBI; Uncharacterized protein | ||||
STRING | Sb01g007440.1 | 1e-160 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 2e-14 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G082600.4.p |
Entrez Gene | 8085914 |