PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G077800.1.p
Common NameSb01g007030, SORBIDRAFT_01g007030
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 383aa    MW: 38888.3 Da    PI: 7.8296
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G077800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.72.4e-32117170255
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           pr+rWt+ LH+rFv+ave LGG+e+AtPk+++elm+vk+Ltl+hvkSHLQ+YR+
  Sobic.001G077800.1.p 117 PRMRWTTALHARFVHAVELLGGHERATPKSVMELMNVKDLTLAHVKSHLQMYRT 170
                           9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.85E-16115171IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-29115171IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-23117170IPR006447Myb domain, plants
PfamPF002497.7E-8118169IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MLQRNLPNLC LQISPPAASS AVVASDAPVA ASAKPPPTQP ISTATYAEGS GEVGFFANPS  60
PGAEPPGLSL GLATPALGDN AAGRRGHHLQ PQGCAFKRAA ARASLPAAGS KRSARAPRMR  120
WTTALHARFV HAVELLGGHE RATPKSVMEL MNVKDLTLAH VKSHLQMYRT VKSTDRSLHT  180
ATGEALPLQR TAATGMEAAA AAAAGGGGGG AGGGVIMVPV PAACDDMVGI CSSPSAGSAP  240
PAMATTSAAH FLCAPAATTA PLAAAPSPPP PIPPRSRTTD HAAAVPEKGV AIVDSLHRPV  300
LEDTHQAAQE KANNGQLPMG LHGCVDLLDP MATNCSSPAS SSPSLASLEQ LTADMYAPNL  360
EISLGRQDWS MDRPEGLCLK YL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-16118172357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-16118172357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-16118172357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-16118172357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.210910.0panicle
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G077800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0651241e-169BT065124.1 Zea mays full-length cDNA clone ZM_BFb0205B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466395.10.0probable transcription factor GLK2
TrEMBLC5WZ980.0C5WZ98_SORBI; Uncharacterized protein
STRINGSb01g007030.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65543750
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.26e-37G2-like family protein