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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G075900.1.p | ||||||||
Common Name | Sb01g006850, SORBIDRAFT_01g006850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 200aa MW: 21757.7 Da PI: 9.3278 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 39.3 | 1.4e-12 | 79 | 132 | 1 | 54 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +++l+r+rrk++NR++A+rsR+RK++++eeL+e ++ L ae ++L +l+ l Sobic.001G075900.1.p 79 QERLRRQRRKMSNRLSAQRSRARKQQRLEELRESAARLRAEKQELEARLQALAR 132 5789*********************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR00043 | 9.9E-5 | 68 | 88 | IPR002112 | Transcription factor Jun |
Gene3D | G3DSA:1.20.5.170 | 5.4E-10 | 73 | 132 | No hit | No description |
SMART | SM00338 | 1.0E-8 | 79 | 143 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.3E-8 | 79 | 131 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.128 | 81 | 144 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.19E-7 | 83 | 132 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 86 | 101 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 5.97E-10 | 88 | 133 | No hit | No description |
PRINTS | PR00043 | 9.9E-5 | 90 | 106 | IPR002112 | Transcription factor Jun |
PRINTS | PR00043 | 9.9E-5 | 108 | 120 | IPR002112 | Transcription factor Jun |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MLSVQDALDL ASSSSYGTMD IITCGFTPWG PESCPSLDQV MASSRPATAA STAVVQEAEA 60 ARDGADAHPD PDPDPEEEQE RLRRQRRKMS NRLSAQRSRA RKQQRLEELR ESAARLRAEK 120 QELEARLQAL ARHDLAVRCQ NARLRAEATA LARRVREASR LLALRRLAYA YALPQQQAAG 180 VGVVPAAAAP LMGLASLMT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G075900.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957676 | 1e-114 | EU957676.1 Zea mays clone 1603335 ocs element-binding factor 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466386.1 | 1e-137 | DNA-binding protein EMBP-1 | ||||
TrEMBL | C5WZ82 | 1e-136 | C5WZ82_SORBI; Uncharacterized protein | ||||
STRING | Sb01g006850.1 | 1e-137 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13845 | 24 | 29 | Representative plant | OGRP12644 | 4 | 5 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G075900.1.p |
Entrez Gene | 8084187 |