PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

FAR1

Protein Properties

Length: 1144aa MW: 129604 Da PI: 6.8646

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G070600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76	7.4e-24	373	459	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY +YA ++GF+vrk k+ +n i++r +vCskeg+r ++ + ++++ r+etrtgC+a++++k + ++k++vt+++ +HnH l Sobic.001G070600.1.p 373 EFYVNYAGTAGFNVRKGWLDKTAKNV-IKSRAYVCSKEGFRPKSASI--ESKKLRPETRTGCQAHMTIKITASAKYVVTEFVADHNHVL 458 6******************96555.**********999877..9999********************************98 PP FAR1 90 a 90 Sobic.001G070600.1.p 459 E 459 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51152	9.691	246	306	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF03101	7.2E-21	373	459	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.8E-22	559	651	IPR018289	MULE transposase domain
Pfam	PF04434	1.5E-4	826	869	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.619	826	873	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.4E-4	848	875	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1144 aa Download sequence Send to blast
MEVVAKDGAG GKWKVTKLVV EHSHELQVAT GDVAATVPAV GMEFDSVDDA KGFYYGYGER 60 VGFKARMGSN RRSVGDGEKI LQRFLCWKGN CANRSKCKDN SDAGKEAEEV VEGASAAAAA 120 GKRKREPYKT RSRNPGKNTE VIEVEKGVGL AGAGNGLELQ NGRRSRRGRS KKAAVEHDEE 180 SVVGFEVEKE VAEGASPASD GDGEDCEGEE DKEGLQEEVE VEVKEKRGRG RPRKTVMEDD 240 ALQAHVLREL GVRASQYNNE ERKKILNKYR SKRQSRPASS RPTKIASRQA LAERRKRGDG 300 GRFLSSEEQL PSQLPSERRS KRLEKQNLKM EKAESKEDET MEVEPDPEIE VVPGPGGEPK 360 VGMVFLNEDK AYEFYVNYAG TAGFNVRKGW LDKTAKNVIK SRAYVCSKEG FRPKSASIES 420 KKLRPETRTG CQAHMTIKIT ASAKYVVTEF VADHNHVLET PLVDIQILKS QKLLAKVLQP 480 PDPPKVVLIP NEYKNYTRTK RMKDMQLGDT QAICEYLHRM KGENPSFFYA IQVDEDDQFT 540 NVFWADGKSI MDYNYFGDVV CVDTRYCTSD YGRHLLLFTG VNHHKQLIIF GSALIYDDSV 600 QSFRWLFETF KSAMSGKKPK TVLTDQSDAL SDAVSSSWPG TTHRFSLLHL YLNATKLFRD 660 TFQGSETFAS DFSRWLYEYE EDDFYSSWEI LSEKYSIKDN EWFCKLYEDR ERWALPCGRD 720 TFCADIATAL RSDNMDTILT DLLKPEIDLQ NFFINYDKFL EEKRLAEQQA DYLGAQIAQR 780 VAPLHLLWQA ANSYTPTLFE MFRMEYEQIS KCMVYSCGEI GPISEYQVTV KDRPRGQFVR 840 FDSTECMVVC SCKKFEFMGL LCCHVLKILD LRDIKELPPH YILKRWRKDA QSESPENYGF 900 AAIDEDPKFS LSKRYNTLYR NLYKIAAKAS ESVEAYAFLE SQYEQLVEQV EVLLQAKLHD 960 KSSLSTVLKG NQPNLLNSEV SSSEHRRATG KKIKNIEVRR QQQSPLDPNK KKKGRQGLLE 1020 PEEIEIPLRV DPPAVSNDIQ NHLRTPTNQF LAPSHMIQAP YVAQQFGLGS LQGFPGMSPF 1080 GQIQEPTHLQ QPHLQPPPFH SGPPITQAPP PDIQSLQFLS SNPQLGHQTT DQGQYTIPVW 1140 DFL*

Sequence ? help Back to Top

Protein Sequence Length: 1144 aa Download sequence Send to blast

MEVVAKDGAG GKWKVTKLVV EHSHELQVAT GDVAATVPAV GMEFDSVDDA KGFYYGYGER  60
VGFKARMGSN RRSVGDGEKI LQRFLCWKGN CANRSKCKDN SDAGKEAEEV VEGASAAAAA  120
GKRKREPYKT RSRNPGKNTE VIEVEKGVGL AGAGNGLELQ NGRRSRRGRS KKAAVEHDEE  180
SVVGFEVEKE VAEGASPASD GDGEDCEGEE DKEGLQEEVE VEVKEKRGRG RPRKTVMEDD  240
ALQAHVLREL GVRASQYNNE ERKKILNKYR SKRQSRPASS RPTKIASRQA LAERRKRGDG  300
GRFLSSEEQL PSQLPSERRS KRLEKQNLKM EKAESKEDET MEVEPDPEIE VVPGPGGEPK  360
VGMVFLNEDK AYEFYVNYAG TAGFNVRKGW LDKTAKNVIK SRAYVCSKEG FRPKSASIES  420
KKLRPETRTG CQAHMTIKIT ASAKYVVTEF VADHNHVLET PLVDIQILKS QKLLAKVLQP  480
PDPPKVVLIP NEYKNYTRTK RMKDMQLGDT QAICEYLHRM KGENPSFFYA IQVDEDDQFT  540
NVFWADGKSI MDYNYFGDVV CVDTRYCTSD YGRHLLLFTG VNHHKQLIIF GSALIYDDSV  600
QSFRWLFETF KSAMSGKKPK TVLTDQSDAL SDAVSSSWPG TTHRFSLLHL YLNATKLFRD  660
TFQGSETFAS DFSRWLYEYE EDDFYSSWEI LSEKYSIKDN EWFCKLYEDR ERWALPCGRD  720
TFCADIATAL RSDNMDTILT DLLKPEIDLQ NFFINYDKFL EEKRLAEQQA DYLGAQIAQR  780
VAPLHLLWQA ANSYTPTLFE MFRMEYEQIS KCMVYSCGEI GPISEYQVTV KDRPRGQFVR  840
FDSTECMVVC SCKKFEFMGL LCCHVLKILD LRDIKELPPH YILKRWRKDA QSESPENYGF  900
AAIDEDPKFS LSKRYNTLYR NLYKIAAKAS ESVEAYAFLE SQYEQLVEQV EVLLQAKLHD  960
KSSLSTVLKG NQPNLLNSEV SSSEHRRATG KKIKNIEVRR QQQSPLDPNK KKKGRQGLLE  1020
PEEIEIPLRV DPPAVSNDIQ NHLRTPTNQF LAPSHMIQAP YVAQQFGLGS LQGFPGMSPF  1080
GQIQEPTHLQ QPHLQPPPFH SGPPITQAPP PDIQSLQFLS SNPQLGHQTT DQGQYTIPVW  1140
DFL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	225	233	KRGRGRPRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G070600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021318250.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
TrEMBL	A0A1Z5S507	0.0	A0A1Z5S507_SORBI; Uncharacterized protein
STRING	Sb01g006380.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP13908	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-96	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Sobic.001G070600.1.p
Entrez Gene	8083938