PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G066100.2.p
Common NameSb01g006020, SORBIDRAFT_01g006020
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TCP
Protein Properties Length: 390aa    MW: 39856.9 Da    PI: 9.5999
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G066100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.22e-36661912126
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgk 89 
                            g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a  ai +l+++  ++a ++  ++     a+ + +++
  Sobic.001G066100.2.p  66 SGGKDRHSKVYTAKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAIEWLINAASSAIEKLPEL-DPAA-FAaLPAPGDADAGGKDKQQ 152
                           689*************************************************************.4444.3333333333333334444 PP

                   TCP  90 aaksaakskksqksaasalnlakesr..akarararert 126
                           + +++a s+ s++s+ s l+l+++    a a ar re t
  Sobic.001G066100.2.p 153 QGSKSAGSSTSETSKGSELSLSRSDGrgAGAAARDREVT 191
                           445555566666666666888884441466666666644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-3467196IPR005333Transcription factor, TCP
PROSITE profilePS5136932.59268126IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEASAVGDGA AGEGAAPAGR SQQGAKRGRG GAVRGSEADA AWGQPPMLPP PQAPGAGSRI  60
YRVRASGGKD RHSKVYTAKG IRDRRVRLSV PTAIQFYDLQ DRLGFDQPSK AIEWLINAAS  120
SAIEKLPELD PAAFAALPAP GDADAGGKDK QQQGSKSAGS STSETSKGSE LSLSRSDGRG  180
AGAAARDREV TVASTSAQAA SFTELLTGVA SAGSITAAEH KQSWHQQPNV SAAAAADCVG  240
IANHGKGAHG LSTHTFSAPA AAKYGNAPPF GLVPAQPFNF TSPIEMPHFS LGQDTLAASS  300
PAAGDYSLNF SMSSGFLGAN RGTLQSNSQS NFSGHNHQHL QRLDGPILFG HAHAAAAAHP  360
ASENQLTASA ALQLWDGLRH SGMKEKSKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2573127155Putative transcription factor PCF6
5zkt_B1e-2573127155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G066100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9565950.0EU956595.1 Zea mays clone 1567541 TCP family transcription factor containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466344.10.0transcription factor PCF6
SwissprotQ10CE81e-109PCF6_ORYSJ; Transcription factor PCF6
TrEMBLC5WY770.0C5WY77_SORBI; Uncharacterized protein
STRINGSb01g006020.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.22e-32TCP family protein