PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G057700.1.p
Common NameSb01g005250, SORBIDRAFT_01g005250
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HSF
Protein Properties Length: 340aa    MW: 38374 Da    PI: 5.4718
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G057700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.75e-35401312102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y++++d++++ ++sws+++nsf+v+d++ f + +Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+
  Sobic.001G057700.1.p  40 FLTKTYDMVDDPTTDAVVSWSATSNSFIVWDPHIFGTVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEEFLRGQ 119
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           ++ll++i+r+k 
  Sobic.001G057700.1.p 120 RHLLKNIRRRKP 131
                           *********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.9E-3536129IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-3836129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-6036129IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.6E-3140129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-204063IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-2091103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF033106.2E-5167255IPR004986Caulimovirus virion-associated protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MNHGNGMLNS VKVESRPSVV ATNGQPRPMD VLHDGGPPPF LTKTYDMVDD PTTDAVVSWS  60
ATSNSFIVWD PHIFGTVLLP RYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEEFLRGQR  120
HLLKNIRRRK PPHSSPNQQS LGSYLEVGHF GYEEEIDQLK RDKQLLMTEV VKLRQEQQNT  180
KSDLQAMEEK LQDTEQKQQQ MMAFMARVMQ NPDFMRQLIS QREMRKELED AISKKRRRRI  240
VQGPEADSMG TGSSLEQGSQ VVFEPLEPVE SLANGVPSDL GSSSVEAKGF EVQQGVSSCG  300
SERLNGKPTA ELNDDFWEDL LHEGGLGAGN AVGQDDMKM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-273812927129Heat shock factor protein 1
5d5v_B4e-273812927129Heat shock factor protein 1
5d5v_D4e-273812927129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233238KKRRRR
2234239KRRRRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.11700.0panicle
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269|PubMed:18064488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G057700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0418770.0BT041877.1 Zea mays full-length cDNA clone ZM_BFb0071P12 mRNA, complete cds.
GenBankBT0884100.0BT088410.1 Zea mays full-length cDNA clone ZM_BFc0182A01 mRNA, complete cds.
GenBankEU9569230.0EU956923.1 Zea mays clone 1577511 heat shock factor protein HSF30 mRNA, complete cds.
GenBankJX4284940.0JX428494.1 Zea mays subsp. mays clone pUT3092 HSF11 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466300.10.0heat stress transcription factor A-2e
SwissprotQ6F3880.0HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBLC5WX780.0C5WX78_SORBI; Uncharacterized protein
STRINGSb01g005250.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-104heat shock transcription factor A6B
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]