PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G056300.2.p | ||||||||
Common Name | Sb01g005130, SORBIDRAFT_01g005130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 284aa MW: 30223.2 Da PI: 7.6747 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.3 | 2.8e-08 | 133 | 177 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ K + a +L + +Y+k L Sobic.001G056300.2.p 133 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAVMLDEILDYVKFL 177 99***********************7.....59**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.67E-15 | 126 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.75E-10 | 126 | 182 | No hit | No description |
PROSITE profile | PS50888 | 15.694 | 128 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-14 | 130 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-5 | 133 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-9 | 134 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MAGQPPPQGP EDDFFDQFFS MAAGGSYPAT AGGGRAPGDQ PFSLALSLDA AAAEASGSGK 60 HADGGKDREA VQLPGLFPPV FSGGVQPPHL RPNPPTQVFR AQQPKQGGAG VGPQPPAPRP 120 KVRARRGQAT DPHSIAERLR RERIAERMRA LQELVPNTNK TDRAVMLDEI LDYVKFLRLQ 180 VKVLSMSRLG GAGAVAQLVA DIPLSVKGEA SDSGSKQQIW EKWSTDGTER QVAKLMEEDI 240 GAAMQFLQSK ALCMMPISLA MAIYDTQHSQ DGQPVKPEPN TPS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 142 | RLRRER |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G056300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU973411 | 0.0 | EU973411.1 Zea mays clone 398294 BHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466294.1 | 0.0 | transcription factor UNE12 isoform X2 | ||||
Swissprot | O22768 | 9e-74 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | C5WX65 | 0.0 | C5WX65_SORBI; Uncharacterized protein | ||||
STRING | Sb01g005130.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 5e-55 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G056300.2.p |
Entrez Gene | 8081254 |
Publications ? help Back to Top | |||
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