PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G056300.1.p
Common NameSb01g005130, SORBIDRAFT_01g005130
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 285aa    MW: 30322.4 Da    PI: 7.6747
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G056300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.8e-08134178554
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           h+++Er RR+ri +++  L+el+P+       K + a +L +  +Y+k L
  Sobic.001G056300.1.p 134 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAVMLDEILDYVKFL 178
                           99***********************7.....59**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.77E-10127183No hitNo description
SuperFamilySSF474596.67E-15127188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.694129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-14131189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-5134178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-9135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAGQPPPQGP EDDFFDQFFS MAAGGSYPAT AGGGRAPGDQ PFSLALSLDA AAAEASGSGK  60
HADGGKVDRE AVQLPGLFPP VFSGGVQPPH LRPNPPTQVF RAQQPKQGGA GVGPQPPAPR  120
PKVRARRGQA TDPHSIAERL RRERIAERMR ALQELVPNTN KTDRAVMLDE ILDYVKFLRL  180
QVKVLSMSRL GGAGAVAQLV ADIPLSVKGE ASDSGSKQQI WEKWSTDGTE RQVAKLMEED  240
IGAAMQFLQS KALCMMPISL AMAIYDTQHS QDGQPVKPEP NTPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143RLRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G056300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9734110.0EU973411.1 Zea mays clone 398294 BHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021306867.10.0transcription factor UNE12 isoform X1
SwissprotO227689e-75UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1B6QHG70.0A0A1B6QHG7_SORBI; Uncharacterized protein
STRINGSb01g005130.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.35e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]