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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G051300.1.p | ||||||||
Common Name | Sb01g004710, SORBIDRAFT_01g004710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 254aa MW: 27216.2 Da PI: 7.5559 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.6 | 1.7e-11 | 134 | 181 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka++L + ++YI+sLq Sobic.001G051300.1.p 134 SHSLAERARREKISERMKVLQDLVPGC----NKVIGKASVLDEIINYIQSLQ 181 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.57E-11 | 128 | 185 | No hit | No description |
SuperFamily | SSF47459 | 6.41E-18 | 128 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.406 | 130 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-18 | 130 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.2E-9 | 134 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.8E-11 | 136 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MEPSPAVAAE LWCPPHLAAG GGRQVEATSA LTEKSSGGRG GGSAVRRRPR ETLASEEDSS 60 RIVSTSGGGQ DLTDPEAKRS KTNKSSNNNG SLRTEAETDP RSAGKAVSKS LPAAEPPKQD 120 YIHVRARRGQ ATDSHSLAER ARREKISERM KVLQDLVPGC NKVIGKASVL DEIINYIQSL 180 QCQVEFLSMK LEAVNAHANQ GVEAFPVKDY GAETYNTAPG LTFDTQTSRE YAQGTSTSEW 240 LHMQIGSGYE RVS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G051300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU966868 | 0.0 | EU966868.1 Zea mays clone 297857 protein SPATULA mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002463714.1 | 0.0 | transcription factor bHLH79 | ||||
Swissprot | Q84T08 | 1e-112 | BH089_ORYSJ; Transcription factor BHLH089 | ||||
TrEMBL | C5WX13 | 0.0 | C5WX13_SORBI; Uncharacterized protein | ||||
STRING | Sb01g004710.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3065 | 35 | 77 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 2e-69 | BIG PETAL P |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G051300.1.p |
Entrez Gene | 8081225 |
Publications ? help Back to Top | |||
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