PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G045500.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 449aa    MW: 48770.9 Da    PI: 4.3242
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G045500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM491.9e-1581545128
                   NAM   5 frFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk.............kvka..eek.ewyfFskrdkkya.tgkr.k 74 
                           ++F+P d+ l++ yL++k++g++ + ++ +i+++d+++ +P dL +             +  +   +k  w+fFs+++   + +g+r +
  Sobic.001G045500.1.p   8 YEFSPCDQRLINAYLRPKIAGEDvIGISGCIHDADVTSDHPYDLVRkhepargsgsgtgT--GggADKgVWFFFSPKRYVGSgSGSRlR 94 
                           68********************97778788**************7336788888776652..133344489999999887663344413 PP

                   NAM  75 nra........tksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                           nra         k+g W++ g++k+v     ++ g  + L + +   +++ +k  W+m ey++
  Sobic.001G045500.1.p  95 NRArtvlgvdgRKKGAWHTEGRKKTVPG---TAGGFFQKLSYEEVtPSRSVVKPGWLMVEYAI 154
                           44467788777779*********99977...66799999***9873455567*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.9724173IPR003441NAC domain
PfamPF023653.6E-138153IPR003441NAC domain
SuperFamilySSF1019411.44E-208173IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MEGLEKYYEF SPCDQRLINA YLRPKIAGED VIGISGCIHD ADVTSDHPYD LVRKHEPARG  60
SGSGTGTGGG ADKGVWFFFS PKRYVGSGSG SRLRNRARTV LGVDGRKKGA WHTEGRKKTV  120
PGTAGGFFQK LSYEEVTPSR SVVKPGWLMV EYAIEEDRGG GGGMVVLCKV YKSPRGPGSD  180
VSLSRKRKAA DVVEQMQRPC KRTHEDAAAP AYQDTEHMFL AGNLLHKDLT ETDYSAAAPA  240
NQETEHKSGG GESAASAGQC TRKTDQVADE GQPRIQEDAM NELTRFWESS ATGHDETTAL  300
DYLLQEDQPI PSCAPHQTKD EDDVMEIRFE EFRGSSSLAG AAPPPCVAQP EDAAVSCVQM  360
SEQKVVPADD DDEIEFTLEE LMMGSSMPGG YSSMPSPRTL TDDDEDDDDD DMRSGLACPP  420
MDYAILEALV ELGPAIMEEE EEDFICDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G045500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC5WW390.0C5WW39_SORBI; Uncharacterized protein
STRINGSb01g004195.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62801545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.26e-09NAC 014