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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G044300.9.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 262aa MW: 28074.1 Da PI: 8.4863 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 76.4 | 3.6e-24 | 153 | 215 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv L+a N +L++el+elkk ++ +++e+ Sobic.001G044300.9.p 153 ERELKRERRKQSNRESARRSRLRKQQECEELAQKVTDLTAINGTLRSELDELKKACEDMEAEN 215 89*********************************************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.3E-16 | 148 | 213 | No hit | No description |
SMART | SM00338 | 1.0E-20 | 153 | 217 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.1E-21 | 153 | 215 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.576 | 155 | 218 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.06E-10 | 156 | 210 | No hit | No description |
CDD | cd14702 | 4.42E-18 | 158 | 208 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 160 | 175 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MQSVPYPSAE PVAVAEGKGK RKSPGAPSVG CTSGSAGGSE NSSDKRDASA HHKVLPSVKR 60 RKSSGANVQG EPSQAATGQD AAAESRITAK KRSAAKLSIS TPEMAATSNV RPNLNIGMEL 120 WSDSPVKAET SGQGEIYAAA PSQLDSALSM MDERELKRER RKQSNRESAR RSRLRKQQEC 180 EELAQKVTDL TAINGTLRSE LDELKKACED MEAENSQLMG ELEQFEAPSV VTTLSIQIDT 240 SKAHHRSSDQ HGNRNNTDSK V* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 169 | 175 | RRSRLRK |
2 | 169 | 176 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G044300.9.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY685207 | 0.0 | AY685207.1 Zea mays ABRE-binding factor Embp-2 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021317831.1 | 0.0 | DNA-binding protein EMBP-1 isoform X1 | ||||
Swissprot | P25032 | 9e-61 | EMBP1_WHEAT; DNA-binding protein EMBP-1 | ||||
TrEMBL | A0A1Z5S4B9 | 0.0 | A0A1Z5S4B9_SORBI; Uncharacterized protein | ||||
STRING | Sb01g004080.1 | 1e-157 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32150.1 | 8e-29 | basic region/leucine zipper transcription factor 68 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G044300.9.p |