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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G044300.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 305aa MW: 32213.7 Da PI: 8.4725 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 77.3 | 2e-24 | 196 | 258 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv L+a N +L++el+elkk ++ +++e+ Sobic.001G044300.7.p 196 ERELKRERRKQSNRESARRSRLRKQQECEELAQKVTDLTAINGTLRSELDELKKACEDMEAEN 258 89*********************************************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.2E-16 | 191 | 256 | No hit | No description |
Pfam | PF00170 | 1.4E-21 | 196 | 258 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 1.0E-20 | 196 | 260 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.576 | 198 | 261 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.44E-10 | 199 | 253 | No hit | No description |
CDD | cd14702 | 6.78E-20 | 201 | 251 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 203 | 218 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MAAAAAAAGA PYGTPVPFHP AYYATHASMA TVNAGHPPSI VSFSSVPYPS AEPVAVAEGK 60 GKRKSPGAPS VGCTSGSSAG GSENSSDKRD ASAHHKVLPS VKRRKSSGAN VQGEPSQAAT 120 GQDAAAESRI TAKKRSAAKL SISTPEMAAT SNVRPNLNIG MELWSDSPVK AETSGQGEIY 180 AAAPSQLDSA LSMMDERELK RERRKQSNRE SARRSRLRKQ QECEELAQKV TDLTAINGTL 240 RSELDELKKA CEDMEAENSQ LMGELEQFEA PSVVTTLSIQ IDTSKAHHRS SDQHGNRNNT 300 DSKV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 212 | 218 | RRSRLRK |
2 | 212 | 219 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G044300.7.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY685207 | 0.0 | AY685207.1 Zea mays ABRE-binding factor Embp-2 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021317831.1 | 0.0 | DNA-binding protein EMBP-1 isoform X1 | ||||
Swissprot | P25032 | 2e-61 | EMBP1_WHEAT; DNA-binding protein EMBP-1 | ||||
TrEMBL | A0A1Z5S4T2 | 0.0 | A0A1Z5S4T2_SORBI; Uncharacterized protein | ||||
STRING | Sb01g004080.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2160 | 36 | 92 | Representative plant | OGRP700 | 17 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32150.1 | 1e-28 | basic region/leucine zipper transcription factor 68 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G044300.7.p |