PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G044300.10.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 233aa    MW: 24116 Da    PI: 10.7102
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G044300.10.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.91.2e-09195219125
                            XXXXCHHHCHHHHHHHHHHHHHHHH CS
                 bZIP_1   1 ekelkrerrkqkNReAArrsRqRKk 25 
                            e+elkrerrkq+NRe+ArrsR+RK+
  Sobic.001G044300.10.p 195 ERELKRERRKQSNRESARRSRLRKQ 219
                            89**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.9E-8190220No hitNo description
PfamPF001701.1E-7195219IPR004827Basic-leucine zipper domain
CDDcd147022.38E-9200219No hitNo description
PROSITE patternPS000360202217IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MAAAAAAAGA PYGTPVPFHP AYYATHASMA TVNAGHPPSI VSFSSVPYPS AEPVAVAEGK  60
GKRKSPGAPS VGCTSGSAGG SENSSDKRDA SAHHKVLPSV KRRKSSGANV QGEPSQAATG  120
QDAAAESRIT AKKRSAAKLS ISTPEMAATS NVRPNLNIGM ELWSDSPVKA ETSGQGEIYA  180
AAPSQLDSAL SMMDERELKR ERRKQSNRES ARRSRLRKQL SALIMSGSAR KT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211217RRSRLRK
2211218RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G044300.10.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6852071e-108AY685207.1 Zea mays ABRE-binding factor Embp-2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317831.11e-155DNA-binding protein EMBP-1 isoform X1
SwissprotP250322e-26EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A1Z5S4D61e-165A0A1Z5S4D6_SORBI; Uncharacterized protein
STRINGSb01g004080.11e-118(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.11e-15basic region/leucine zipper transcription factor 68