PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G041500.1.p
Common NameSb01g003830, SORBIDRAFT_01g003830
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 268aa    MW: 27691.3 Da    PI: 7.0501
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G041500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.7e-1170116354
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r+h e+E+rRR+ri+s +++Lr +l  +     +K +Ka+ L kAve +++L
  Sobic.001G041500.1.p  70 RNHREAEKRRRERIKSHLDRLRNVLACD-----PKIDKASLLAKAVERVRDL 116
                           78************************98.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.82167116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-1168119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-970116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1071120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-873122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MFPAEVSALA AASGAGAGRQ AAGEAAGGGV LPMLPPFFMG SIWPASSEED EAAAAAAAAA  60
AHDRALAASR NHREAEKRRR ERIKSHLDRL RNVLACDPKI DKASLLAKAV ERVRDLKQRA  120
AGVGEAAPAH LFPTEHDEIV VLASGSGAVF EASVCCDDRS DLLPDLIETL RALRLRTLRA  180
EMATLGGRVR NVLVLARDVA DGGVVVTGDD DGYGGRAADS VGATDGANGT GGDFLKEALR  240
ALVERPGAAG DRPKRRRVSG MNMQAAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253257KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G041500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279660.0KJ727966.1 Zea mays clone pUT6079 bHLH transcription factor (bHLH48) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466222.10.0transcription factor bHLH106
TrEMBLC5WW010.0C5WW01_SORBI; Uncharacterized protein
STRINGSb01g003830.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.17e-33bHLH family protein