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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.001G039800.1.p |
Common Name | Sb01g003670, SORBIDRAFT_01g003670 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
ERF |
Protein Properties |
Length: 241aa MW: 25870.3 Da PI: 10.8843 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.001G039800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 60.8 | 3e-19 | 81 | 130 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
+++GVr+++ +grW+AeIrdp + +r +lg+f taeeAa a++aa +++g
Sobic.001G039800.1.p 81 RFRGVRRRP-WGRWAAEIRDP-----HsrRRLWLGTFNTAEEAANAYDAANIRFRG 130
69*******.**********7.....335*********************999998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 241 aa
Download sequence Send
to blast |
MGTNPLLQEL AAVVVAAADS EPPRPRPRVV RILVHDADAT DSSSSEDEAR PPPRRRARGG 60 NSSVGVRRHV MEPAGASSSV RFRGVRRRPW GRWAAEIRDP HSRRRLWLGT FNTAEEAANA 120 YDAANIRFRG ASAPTNFPAA SYSPPPEPAK PIISLTPEPG KVITLPPVPV KQTFPLQVKE 180 EGGSRDGQVK GGSSEVKALP PKRVWEMIPS KRQKYPGCAD GSGLRAIHAA SLYVEEVGGA 240 *
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Functional Description ? help
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Source |
Description |
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT060929 | 0.0 | BT060929.1 Zea mays full-length cDNA clone ZM_BFb0072L15 mRNA, complete cds. |
GenBank | JX469917 | 0.0 | JX469917.1 Zea mays subsp. mays clone UT3173 WRKY-type transcription factor mRNA, partial cds. |