![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_32509.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 220aa MW: 24507.5 Da PI: 6.5057 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 24 | 49 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y C +C ksF +k ++++Hi H Sme2.5_32509.1_g00001.1 24 YICAapYCFKSFLNKTEFESHIHEnH 49 889999****************8877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.663 | 24 | 50 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 26 | 49 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence Send to blast |
TFVLFSCDER IQKIQTIPKL EEVYICAAPY CFKSFLNKTE FESHIHENHS DLLVKIAEKD 60 DYISESASAK KPATSESTLQ APTRSIFSPS SGSQVHDRED KAHNALTRDQ QPPRPFMQQK 120 PPFTGSIKNH PLEQQYANPR SGFERPGMQY QLLQQGCAQG SLQPDPGHFP DKQQGIVGSF 180 PFPEYPMGMP QPHGFAVPMS SNSGLAPQFG YPPFAPDGPQ |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016542306.1 | 1e-110 | PREDICTED: E3 ubiquitin-protein ligase Hakai | ||||
TrEMBL | A0A2G3BKT2 | 1e-111 | A0A2G3BKT2_CAPCH; Uncharacterized protein | ||||
STRING | XP_009786415.1 | 1e-100 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6404 | 4 | 5 |