PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_32509.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 220aa    MW: 24507.5 Da    PI: 6.5057
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_32509.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000272449123
                             EEET..TTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                             y C   +C ksF +k ++++Hi   H
  Sme2.5_32509.1_g00001.1 24 YICAapYCFKSFLNKTEFESHIHEnH 49
                             889999****************8877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.6632450IPR007087Zinc finger, C2H2
PROSITE patternPS0002802649IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
TFVLFSCDER IQKIQTIPKL EEVYICAAPY CFKSFLNKTE FESHIHENHS DLLVKIAEKD  60
DYISESASAK KPATSESTLQ APTRSIFSPS SGSQVHDRED KAHNALTRDQ QPPRPFMQQK  120
PPFTGSIKNH PLEQQYANPR SGFERPGMQY QLLQQGCAQG SLQPDPGHFP DKQQGIVGSF  180
PFPEYPMGMP QPHGFAVPMS SNSGLAPQFG YPPFAPDGPQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016542306.11e-110PREDICTED: E3 ubiquitin-protein ligase Hakai
TrEMBLA0A2G3BKT21e-111A0A2G3BKT2_CAPCH; Uncharacterized protein
STRINGXP_009786415.11e-100(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA640445