PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_25859.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 154aa MW: 18412.5 Da PI: 4.7918 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.7 | 2.6e-10 | 54 | 139 | 8 | 95 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 +++++++ ++p + +++++++ + +t++d+ gr++e +++ + + r++l++GW++ ++ n ++ D ++ +++++ s+++ Sme2.5_25859.1_g00001.1 54 EMSGTHKKKYIPIDLVRDYKLE--FPPSITIRDSIGREFETRVKKWVDD-RVWLAGGWRNLCRWNLVEKDDRCICEFVREkSSKRI 136 567788889**********887..5557999************888886.89************************9988788776 PP EEE CS B3 93 vvk 95 +++ Sme2.5_25859.1_g00001.1 137 HLQ 139 665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 8.684 | 47 | 146 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-8 | 55 | 137 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-11 | 60 | 143 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-14 | 60 | 139 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 154 aa Download sequence Send to blast |
YIVEEEDTKE QVEKEEKEET HETALCSKCR YVEEKEEDKN EGEREEEIEE IGNEMSGTHK 60 KKYIPIDLVR DYKLEFPPSI TIRDSIGREF ETRVKKWVDD RVWLAGGWRN LCRWNLVEKD 120 DRCICEFVRE KSSKRIHLQV QVLHEGSSSH PDNK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015089724.1 | 8e-44 | B3 domain-containing protein At5g60140-like | ||||
TrEMBL | M1DCJ6 | 1e-46 | M1DCJ6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400086815 | 2e-47 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1091 | 22 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31640.1 | 5e-08 | B3 family protein |