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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_24399.1_g00001.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
Whirly |
Protein Properties |
Length: 188aa MW: 20773.5 Da PI: 8.9888 |
Description |
Whirly family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_24399.1_g00001.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Whirly | 218.6 | 5.8e-68 | 11 | 149 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsn 86
s+yk+kaal+v+++ p+f+ ldsg++kl+r+G ++l++a+a+++r+ydW++kq+f+ls+te++++++l++k+sceffhdp ++ s+
Sme2.5_24399.1_g00001.1 11 SIYKGKAALTVEPRSPEFSPLDSGAFKLSRDGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKGRSD 96
7************************************************************************************* PP
Whirly 87 eGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
eG+vrk+lkvePlpdGsG+f+nlsv+n+l++ +e++++Pv+kaefavl s+++
Sme2.5_24399.1_g00001.1 97 EGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFN 149
*************************************************9986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 188 aa
Download sequence Send
to blast |
ASTPKVFVGY SIYKGKAALT VEPRSPEFSP LDSGAFKLSR DGMVMLQFAP AAGVRQYDWS 60 RKQVFSLSVT EIGSIISLGA KDSCEFFHDP NKGRSDEGRV RKVLKVEPLP DGSGHFFNLS 120 VQNKLINLDE NIYIPVTKAE FAVLVSAFNF VVPYLLGWHT AANSFKPEDA SRSNNANPRS 180 GAELEWNR
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1l3a_A | 1e-135 | 1 | 187 | 33 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 1e-135 | 1 | 187 | 33 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 1e-135 | 1 | 187 | 33 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 1e-135 | 1 | 187 | 33 | 219 | p24: plant transcriptional regulator PBF-2 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF233342 | 0.0 | AF233342.1 Solanum tuberosum DNA-binding protein p24 mRNA, complete cds. |