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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_20966.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 88aa MW: 10418.6 Da PI: 7.7841 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 23 | 1.7e-07 | 67 | 86 | 3 | 22 |
G2-like 3 rlrWtpeLHerFveaveqLG 22 ++Wt++LH++F+++v+qLG Sme2.5_20966.1_g00001.1 67 YIKWTEDLHAKFMDVVHQLG 86 589****************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-5 | 63 | 86 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MRSKKEREGL GNNNIVGEDE ESREEESNNI HEAENDIMLT GRYKPRKKRS RKSMKEINEG 60 ESRRKNYIKW TEDLHAKFMD VVHQLGEG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015165596.1 | 8e-18 | PREDICTED: putative two-component response regulator ARR13 | ||||
TrEMBL | M1DU28 | 5e-17 | M1DU28_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400094405 | 9e-18 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA813 | 23 | 84 |