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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_20831.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 118aa MW: 13791.9 Da PI: 8.4007 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 47.8 | 2.3e-15 | 37 | 62 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ ++ tG C+yGd+C+FaHg Sme2.5_20831.1_g00002.1 37 FKTELCNKWQDTGACPYGDNCQFAHG 62 79***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 6.5E-20 | 31 | 69 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-12 | 33 | 68 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.68 | 36 | 64 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-9 | 36 | 63 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-12 | 37 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 70 | 105 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-6 | 70 | 102 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 9.019 | 74 | 102 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6 | 74 | 101 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
PKLNMCVVMM QQRVYVKGGS KKEEPPIELD VYNQGMFKTE LCNKWQDTGA CPYGDNCQFA 60 HGIEELRPVL RHPRYNAEVC RMVLNGDPCP YCHRCHFRHT LTDQEKLMRS LNSKMRSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 4e-19 | 37 | 99 | 4 | 66 | Butyrate response factor 2 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC212304 | 1e-132 | AC212304.2 Solanum lycopersicum chromosome 05 clone C05HBa0309L13, complete sequence. | |||
GenBank | HG975517 | 1e-132 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006344185.1 | 3e-72 | PREDICTED: zinc finger CCCH domain-containing protein 15-like | ||||
Swissprot | Q9C9F5 | 1e-48 | C3H15_ARATH; Zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | M1D0A8 | 8e-71 | M1D0A8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400078522 | 1e-71 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9140 | 22 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 4e-51 | C3H family protein |