PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_19951.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 604aa MW: 69866 Da PI: 8.745

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_19951.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	38.6	3.4e-12	5	127	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.k.....kvkaeekewy.fFskrdkkyatgkrknratk 79 G+rF P+d+e++ ++L + v++++++ + +++d+y ePw++ + ++ ++++ y +F+++ ++nr+ + Sme2.5_19951.1_g00001.1 5 EGYRFYPSDSEIL-KFLLRFVAKQEMHDGGFiTTNIDVYGQqEPWEIYnQgvpsgGLDDDDDSSYrYFITK--------KSNRIDH 81 69*********9.8888888888877767735566996549**733555553333444444133332........4689889 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +Wk++ + k v+ + ++ ++ + yk++ e +W+m+ey+l Sme2.5_19951.1_g00001.1 82 GCFWKQQDEGKLVHY-NMHNSSSTTIVIGYKKKM--HEDGHWIMKEYQL 127 99**9999999.555555555555564433..3589*****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	15.023	3	150	IPR003441	NAC domain
SuperFamily	SSF101941	6.93E-12	5	144	IPR003441	NAC domain
Pfam	PF02365	2.2E-9	5	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence Send to blast
MEQKEGYRFY PSDSEILKFL LRFVAKQEMH DGGFITTNID VYGQQEPWEI YNQGVPSGGL 60 DDDDDSSYRY FITKKSNRID HGCFWKQQDE GKLVHYNMHN SSSTTIVIGY KKKMHEDGHW 120 IMKEYQLSMA ILLKFEEDRR DYVLSTSSSK RYPTPSRSTT KQTSPELIPE SVSSTFKENS 180 KKVHGVDFNL NIPKVYIMNL NLPPSPTASD MRPTHTRQDS LGVLTSSDEF TINRDLIREW 240 WNDWYVSTKY KPSTSIPDKP HSYIPDKPST SSPNIETNPI FKVPEFSREN YPKLSAEFSQ 300 SSDLLDKINQ ELSKLNISRG EVSTRLTRQD WHPHKRNFYS KPRGVFDGSS IIAWNLDGMA 360 EEQIYNLLQK MGIAVTAYKL KGAGDKQSAT MLIAGFTGNL KNWWNNYLTD GDKNAIQNSA 420 TTKMVVKTEG GMERSSEEIV EDATTTLLYC IAKNFIGEPK LFQDRNLEIL NNLYCKRLTD 480 FRWYKDMFLS KVMIRPDCSN DYWKERFLSG LPSLFAEKVR TKIRDRYNGK IPYPQLSYGD 540 LIRTINMVAT DLCTDLKLEE QLKKDPRKTA HELESFCQDF GFAVLKPPSA RKPGKKERRG 600 KYND

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence Send to blast

MEQKEGYRFY PSDSEILKFL LRFVAKQEMH DGGFITTNID VYGQQEPWEI YNQGVPSGGL  60
DDDDDSSYRY FITKKSNRID HGCFWKQQDE GKLVHYNMHN SSSTTIVIGY KKKMHEDGHW  120
IMKEYQLSMA ILLKFEEDRR DYVLSTSSSK RYPTPSRSTT KQTSPELIPE SVSSTFKENS  180
KKVHGVDFNL NIPKVYIMNL NLPPSPTASD MRPTHTRQDS LGVLTSSDEF TINRDLIREW  240
WNDWYVSTKY KPSTSIPDKP HSYIPDKPST SSPNIETNPI FKVPEFSREN YPKLSAEFSQ  300
SSDLLDKINQ ELSKLNISRG EVSTRLTRQD WHPHKRNFYS KPRGVFDGSS IIAWNLDGMA  360
EEQIYNLLQK MGIAVTAYKL KGAGDKQSAT MLIAGFTGNL KNWWNNYLTD GDKNAIQNSA  420
TTKMVVKTEG GMERSSEEIV EDATTTLLYC IAKNFIGEPK LFQDRNLEIL NNLYCKRLTD  480
FRWYKDMFLS KVMIRPDCSN DYWKERFLSG LPSLFAEKVR TKIRDRYNGK IPYPQLSYGD  540
LIRTINMVAT DLCTDLKLEE QLKKDPRKTA HELESFCQDF GFAVLKPPSA RKPGKKERRG  600
KYND

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016540640.1	1e-107	PREDICTED: uncharacterized protein LOC107841160
TrEMBL	A0A1U8EBF5	1e-105	A0A1U8EBF5_CAPAN; uncharacterized protein LOC107841160

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61910.1	7e-06	NAC domain protein 66