PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_19025.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family DBB
Protein Properties Length: 275aa    MW: 29257.2 Da    PI: 4.9376
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_19025.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.71.8e-06447542
                 zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                              C+ +e  e+++ C  ++  lC  C ++ H        H++vpl
  Sme2.5_19025.1_g00001.1  4 QCNACEAAEAKILCCADEAALCWYCDDKVHAAnklankHQRVPL 47
                             7******99*********************66889999999986 PP
2zf-B_box279.4e-095386235
                 zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35
                              ++kC+ ++e    +fC +++ llC++C  ++H 
  Sme2.5_19025.1_g00001.1 53 PMPKCDICQETVGFFFCLEDRALLCRKCDISIHT 86
                             689*******9999*******************3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.623147IPR000315B-box-type zinc finger
CDDcd000216.48E-6347No hitNo description
SMARTSM003366.3E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.8735299IPR000315B-box-type zinc finger
SMARTSM003366.4E-155299IPR000315B-box-type zinc finger
PfamPF006431.3E-65394IPR000315B-box-type zinc finger
CDDcd000213.85E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MKIQCNACEA AEAKILCCAD EAALCWYCDD KVHAANKLAN KHQRVPLSAS SSPMPKCDIC  60
QETVGFFFCL EDRALLCRKC DISIHTVNSY VSAHQRFLLT GVKVGLEPLG PSASTSSGKS  120
PSIQKVVEQE SPPIPKIIAP VSSVAPCDGA LPVHTNGTGN FAPSRLQLVG GSAAGVIPQW  180
QFDEYIGMGD LNQNYGYMDY GPSKANDEKL GESAGSAFLK DADAEVAGDE CFSTEAPDTC  240
WAVPQIPSTP TASGLHWPMK SIQNPFDACI VGIGR
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2095336e-72AC209533.1 Solanum lycopersicum DNA sequence from clone LE_HBa-140M1 on chromosome 12, complete sequence.
GenBankHG9754516e-72HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755246e-72HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006367654.11e-177PREDICTED: B-box zinc finger protein 22-like
SwissprotQ9SYM25e-83BBX22_ARATH; B-box zinc finger protein 22
TrEMBLM1BN321e-176M1BN32_SOLTU; B-box zinc finger protein 17
STRINGPGSC0003DMT4000489641e-176(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28922346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-82light-regulated zinc finger protein 1