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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_18867.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NF-YB | ||||||||
Protein Properties | Length: 193aa MW: 21265 Da PI: 6.5035 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 54.2 | 3.5e-17 | 69 | 110 | 54 | 95 |
NF-YB 54 cqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 ++ e+rkti++ddllwa+ +lGf+dyve+l ++l++yre++g Sme2.5_18867.1_g00001.1 69 TKVEQRKTITADDLLWAMDKLGFDDYVETLALFLQRYREFDG 110 578************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 9.52E-11 | 69 | 110 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 2.9E-5 | 69 | 87 | No hit | No description |
Gene3D | G3DSA:1.10.20.10 | 3.5E-13 | 70 | 110 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 2.9E-5 | 88 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MINSNQVGGS RNGRFHSYCR SLQPIPACSP SPATGMNMGL PTHLNQAIDV TTKDSECAIW 60 EKNHFMPTTK VEQRKTITAD DLLWAMDKLG FDDYVETLAL FLQRYREFDG RGSLKGEPLV 120 LKRPIVDSAS GCNIMPYHLP PNFPMAYHHG YFGFPPTITK YMQADTSNGS TSQSAVAVAD 180 SEVDSPAKEG TSN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015168332.1 | 1e-68 | PREDICTED: nuclear transcription factor Y subunit B-8-like isoform X1 | ||||
Refseq | XP_015168333.1 | 1e-68 | PREDICTED: nuclear transcription factor Y subunit B-8-like isoform X1 | ||||
TrEMBL | A0A3Q7J7C7 | 2e-50 | A0A3Q7J7C7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g009440.2.1 | 1e-54 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21970.1 | 2e-19 | NF-YB family protein |