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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_18408.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 186aa MW: 22132.4 Da PI: 9.6721 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 115.4 | 5.7e-36 | 36 | 153 | 12 | 128 |
NAM 12 eelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +el+++yL++k+ + +le + i e++iyk++P+ + + k ++ ek wy ++rd+ky++ +r++++t +gyWkatg d+++++ Sme2.5_18408.1_g00001.1 36 SELITHYLERKIGNLRLEP-NKIYEMNIYKYDPKMIVAyvKPTTAEKVWYILTPRDRKYQNRHRPSKSTGNGYWKATGADRDIKDD 120 79**************999.77**************74235556888**************************************9 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+ vg++k Lv+y g+apkg+kt+W+mheyrl Sme2.5_18408.1_g00001.1 121 KNVIVGVRKALVYYYGKAPKGQKTNWIMHEYRL 153 999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.203 | 25 | 180 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-41 | 36 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-18 | 36 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
NLNLFDEKQN NMEFLDEDVD DVPIKGTRIL SDIYQSELIT HYLERKIGNL RLEPNKIYEM 60 NIYKYDPKMI VAYVKPTTAE KVWYILTPRD RKYQNRHRPS KSTGNGYWKA TGADRDIKDD 120 KNVIVGVRKA LVYYYGKAPK GQKTNWIMHE YRLTGVPDIS QRGPKDLKLD DWVLCRIRFM 180 HEYRLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-39 | 37 | 177 | 29 | 162 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-39 | 37 | 177 | 29 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-39 | 37 | 177 | 29 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-39 | 37 | 177 | 29 | 162 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-39 | 37 | 177 | 32 | 165 | NAC domain-containing protein 19 |
3swm_B | 7e-39 | 37 | 177 | 32 | 165 | NAC domain-containing protein 19 |
3swm_C | 7e-39 | 37 | 177 | 32 | 165 | NAC domain-containing protein 19 |
3swm_D | 7e-39 | 37 | 177 | 32 | 165 | NAC domain-containing protein 19 |
3swp_A | 7e-39 | 37 | 177 | 32 | 165 | NAC domain-containing protein 19 |
3swp_B | 7e-39 | 37 | 177 | 32 | 165 | NAC domain-containing protein 19 |
3swp_C | 7e-39 | 37 | 177 | 32 | 165 | NAC domain-containing protein 19 |
3swp_D | 7e-39 | 37 | 177 | 32 | 165 | NAC domain-containing protein 19 |
4dul_A | 6e-39 | 37 | 177 | 29 | 162 | NAC domain-containing protein 19 |
4dul_B | 6e-39 | 37 | 177 | 29 | 162 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009793862.1 | 1e-64 | PREDICTED: NAC domain-containing protein 102-like | ||||
Refseq | XP_016578729.1 | 1e-64 | PREDICTED: NAC domain-containing protein 72-like | ||||
Swissprot | Q39013 | 6e-43 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A314KWZ2 | 4e-64 | A0A314KWZ2_NICAT; Nac transcription factor 25 | ||||
STRING | XP_009793862.1 | 4e-64 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13936 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 3e-45 | NAC family protein |