PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_18315.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NF-YB | ||||||||
Protein Properties | Length: 222aa MW: 25164.2 Da PI: 6.3398 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 145.9 | 9.2e-46 | 41 | 135 | 1 | 95 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 vreqd f+ ian++rim+k+lP +aki +d ket+qecvsefisfvt++a+d+cqr++rkti+ +d+lwa+++lGf+d++epl+ + Sme2.5_18315.1_g00001.1 41 VREQDGFMSIANIIRIMRKILPPHAKIFNDVKETIQECVSEFISFVTGKANDRCQRKQRKTITVEDVLWAMSKLGFDDHIEPLTFH 126 58************************************************************************************ PP NF-YB 87 lkkyreleg 95 l++yre++g Sme2.5_18315.1_g00001.1 127 LHRYRECDG 135 ******987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.1E-42 | 36 | 137 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.1E-30 | 44 | 137 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-22 | 50 | 111 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.1E-13 | 75 | 93 | No hit | No description |
PRINTS | PR00615 | 1.1E-13 | 94 | 112 | No hit | No description |
PRINTS | PR00615 | 1.1E-13 | 113 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MVSLMPKLSN VSFSIQDAIF ITNPNNNNNN ASVTDESECT VREQDGFMSI ANIIRIMRKI 60 LPPHAKIFND VKETIQECVS EFISFVTGKA NDRCQRKQRK TITVEDVLWA MSKLGFDDHI 120 EPLTFHLHRY RECDGGNCGS LRGESLMLLK SRDSMIDPAT STSIPSNMGP INYPLPPNFT 180 MSHHHHHGYF AYAQMNNENV SSNSQANHDD ANNVESFREQ KE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-53 | 37 | 132 | 2 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015073076.1 | 1e-113 | nuclear transcription factor Y subunit B-6-like | ||||
Swissprot | Q84W66 | 2e-56 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A3Q7GRZ3 | 1e-110 | A0A3Q7GRZ3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g015060.1.1 | 1e-112 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 6e-58 | nuclear factor Y, subunit B6 |