PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_18295.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 238aa    MW: 26460.8 Da    PI: 5.8633
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_18295.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.6e-19133219498
                              E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                       B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               ++ps+v+   +l lp +f++++   ++++  +tl de+g++W   +    ++++  l++GWk+F+ +++L +gD +vF+l++ ++
  Sme2.5_18295.1_g00001.1 133 PMLPSHVSGGFWLGLPSNFCRKNL--PRRDDSITLVDETGEEWPTVY--LAQKCG--LSGGWKKFAVDHNLADGDAIVFHLIRPTK 212
                              6899******************94..345568***************..555555..9************************9777 PP

                              E..EEEEE- CS
                       B3  90 felvvkvfr 98 
                              f  +v ++r
  Sme2.5_18295.1_g00001.1 213 F--KVYIIR 219
                              7..888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.81E-25123221IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-22123220IPR015300DNA-binding pseudobarrel domain
CDDcd100175.78E-28128219No hitNo description
SMARTSM010197.5E-24130221IPR003340B3 DNA binding domain
PROSITE profilePS5086313.733130221IPR003340B3 DNA binding domain
PfamPF023621.9E-17133219IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
HYRVHQLEYK AAVTELLGKA AMIYSQRIRQ LEGEKMGLEG SHDEISEPLG NLRKAAATAN  60
QSFLRIALEL NDHFVVPTSV EYHEGSNVGL STPAKRDRLF FSYASDEERA ASIEKAEKLE  120
ASLGSDYPVL VRPMLPSHVS GGFWLGLPSN FCRKNLPRRD DSITLVDETG EEWPTVYLAQ  180
KCGLSGGWKK FAVDHNLADG DAIVFHLIRP TKFKVYIIRV SSASEGESTE TSSNDEAF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0145119e-80BT014511.1 Lycopersicon esculentum clone 133894R, mRNA sequence.
GenBankHG9754439e-80HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755169e-80HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072119.11e-90B3 domain-containing protein At5g42700-like
SwissprotQ69V362e-50Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLM1ADZ48e-89M1ADZ4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000207001e-89(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-49B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]