PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Sme2.5_17281.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NF-YC

Protein Properties

Length: 118aa MW: 13212.5 Da PI: 7.3377

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_17281.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	53.5	5.2e-17	1	44	26	69
NF-YC 26 ikkilkadedvkmisaeaPvllskacelfileltlrswlhaeen 69 +k+i+k++ dv ++saeaP+ll k cel+i eltl sw h++e+ Sme2.5_17281.1_g00002.1 1 MKRIMKSNSDVLKVSAEAPILLMKVCELLIGELTLHSWRHTQEQ 44 59****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	6.48E-9	1	44	IPR009072	Histone-fold
Pfam	PF00808	5.1E-8	1	43	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	8.1E-14	2	44	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MKRIMKSNSD VLKVSAEAPI LLMKVCELLI GELTLHSWRH TQEQLAVLRV IIGNLAMPVA 60 PSVYVHPWFQ VREVVENYPY ATGGNNGQGN LDPQRCLLKA IGPLSCEYPY DYCPCILA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	2e-12	nuclear factor Y, subunit C3