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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sme2.5_17209.1_g00001.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
C3H |
| Protein Properties |
Length: 319aa MW: 35909.8 Da PI: 7.0588 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_17209.1_g00001.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 22.7 | 1.7e-07 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
C ++++ G C yG+rC++ H+
Sme2.5_17209.1_g00001.1 34 VCTYYQK-GLCAYGSRCRYEHV 54
5******.***********997 PP
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| 2 | zf-CCCH | 24.5 | 4.7e-08 | 141 | 163 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
+++C fa+ G C++G++C+++Hg
Sme2.5_17209.1_g00001.1 141 RSICA-FAAAGNCPRGENCPYIHG 163
56788.*****************9 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 12.117 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.006 | 2 | 27 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.7E-6 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.145 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0012 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.57E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.8E-5 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.986 | 138 | 165 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.9E-4 | 139 | 164 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.66E-5 | 140 | 163 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.4E-5 | 141 | 163 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 143 | 163 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF57850 | 1.33E-12 | 200 | 273 | No hit | No description |
| Gene3D | G3DSA:3.30.40.10 | 3.0E-10 | 202 | 266 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| CDD | cd00162 | 0.00138 | 206 | 266 | No hit | No description |
| PROSITE profile | PS50089 | 12.475 | 207 | 265 | IPR001841 | Zinc finger, RING-type |
| SMART | SM00184 | 4.1E-7 | 207 | 264 | IPR001841 | Zinc finger, RING-type |
| Pfam | PF00097 | 4.1E-7 | 207 | 264 | IPR018957 | Zinc finger, C3HC4 RING-type |
| PROSITE pattern | PS00518 | 0 | 231 | 240 | IPR017907 | Zinc finger, RING-type, conserved site |
| SMART | SM00356 | 13 | 294 | 318 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.202 | 294 | 319 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 319 aa
Download sequence Send
to blast |
MKEAVLCKFF VHGACLKGEY CGFSHDWKDP PNNVCTYYQK GLCAYGSRCR YEHVKVSEQP 60
SLPSSSAPDQ HLLSAPPPTT VSPGMLTDGA EILSGISSEY LTSGPPFYPP DQPVWGENSE 120
HHDAADIDNI VELKIMNPAD RSICAFAAAG NCPRGENCPY IHGDLCPVCS KHCLHPFRPQ 180
EREEHMKTCE KRQKRLDLLK YSQEIECSVC LERVLSKTTA AERKFGILFE CDHPFCISCI 240
RHWRSGSGSS EIDVNSTFRT CPVCRKLSYF VIPSISWYST IEEKKNIIDS YKAKLRTIDC 300
KHYDFGNGTC PFGNSCFYK
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