 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_16564.1_g00001.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
HD-ZIP |
Protein Properties |
Length: 224aa MW: 25965.2 Da PI: 7.1482 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_16564.1_g00001.1 | genome | EGD | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 62.5 | 6.5e-20 | 47 | 100 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
++++++eq++ Le+ Fe ++++ e++++LA++l+L+ +qV vWFqNrRa++k+
Sme2.5_16564.1_g00001.1 47 KRKLSEEQVNLLERSFEDTPKLGSERKAKLASELDLDPQQVAVWFQNRRARWKN 100
45899***********************************************95 PP
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2 | HD-ZIP_I/II | 108.9 | 3.6e-35 | 46 | 136 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87
+kr+ls+eqv+lLE+sFe + kL +erK++la+eL+l+p+qvavWFqnrRAR+k+k lE +y++Lk++++ e +rLe e ++
Sme2.5_16564.1_g00001.1 46 RKRKLSEEQVNLLERSFEDTPKLGSERKAKLASELDLDPQQVAVWFQNRRARWKNKTLEDEYSKLKSHHEIAIVEICRLEIEILKI 131
8*****************999***************************************************************** PP
HD-ZIP_I/II 88 reelk 92
+e+l
Sme2.5_16564.1_g00001.1 132 KEQLF 136
99985 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 224 aa
Download sequence Send
to blast |
MVMISQYYPG IYNQLVPNQG FSSEEGKPWR RRKKNKGETG NSGVVRKRKL SEEQVNLLER 60 SFEDTPKLGS ERKAKLASEL DLDPQQVAVW FQNRRARWKN KTLEDEYSKL KSHHEIAIVE 120 ICRLEIEILK IKEQLFEAQK EIQRLSLEHN CPRVSNNNST LHQVSMEQPH FLGEFGMEEI 180 LMDDNIFRVA DSVFDAQNTS HTSSSLNRAA TFSWGIWNGG NINE
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 29 | 47 | RRRKKNKGETGNSGVVRKR |
2 | 31 | 48 | RKKNKGETGNSGVVRKRK |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975515 | 6e-93 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |