PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_15497.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Trihelix

Protein Properties

Length: 476aa MW: 54592 Da PI: 6.5582

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_15497.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.5	2e-19	360	429	1	68
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnk.rykkikege 68 rW++ ev +Li +r+++e+++++ g k+ lWee+s+ m++ gf+r++ +Ckekwen++k k++ke Sme2.5_15497.1_g00001.1 360 RWPQAEVETLIHIRTSLESKFQEaGTPKGLLWEEISNSMASMGFKRTARRCKEKWENMHKcTVKRTKEFT 429 8*******************857899****************************983355555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.399	353	418	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.7E-5	355	419	IPR009057	Homeodomain-like
SMART	SM00717	0.0018	357	420	IPR001005	SANT/Myb domain
Pfam	PF13837	5.1E-15	359	427	No hit	No description
CDD	cd12203	1.98E-22	359	419	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MQSDYEMAGI HHQQSQVEEQ HRFMVENNAS TSSPFFPINP SYHFPHPLVQ HIPMTLQFPQ 60 YQYPHYRSML EHQEGSFFNT KGEIRGQEDA LIRGSEGYCT QPRQTSIAVW QNQDDSAIKQ 120 PFWKPLSAEF SNGNNNNNKQ EENQEMYPPK EIHHQEANKR RMLFGELEAI YADNTNVDIH 180 RIASESVLTV EDLPMSHNVS FPQLALNDST QPTAMATTAA TGIDNIGSEC ASVGGREAEV 240 TRGDVHKRKR AKESITTTSM SRFFESLVKK LAKHQEGLQR SFMETIERLD QERKEREQVW 300 REQELAKLQK EAAVRAHERS LASSREAALV SCLEKLTGQK INFQPLNKED STLAKLNKKR 360 WPQAEVETLI HIRTSLESKF QEAGTPKGLL WEEISNSMAS MGFKRTARRC KEKWENMHKC 420 TVKRTKEFTR EQLTSCTATV DFVNQGNDTI VDHLATVNNI PDGNADEKDK HEDMKE

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MQSDYEMAGI HHQQSQVEEQ HRFMVENNAS TSSPFFPINP SYHFPHPLVQ HIPMTLQFPQ  60
YQYPHYRSML EHQEGSFFNT KGEIRGQEDA LIRGSEGYCT QPRQTSIAVW QNQDDSAIKQ  120
PFWKPLSAEF SNGNNNNNKQ EENQEMYPPK EIHHQEANKR RMLFGELEAI YADNTNVDIH  180
RIASESVLTV EDLPMSHNVS FPQLALNDST QPTAMATTAA TGIDNIGSEC ASVGGREAEV  240
TRGDVHKRKR AKESITTTSM SRFFESLVKK LAKHQEGLQR SFMETIERLD QERKEREQVW  300
REQELAKLQK EAAVRAHERS LASSREAALV SCLEKLTGQK INFQPLNKED STLAKLNKKR  360
WPQAEVETLI HIRTSLESKF QEAGTPKGLL WEEISNSMAS MGFKRTARRC KEKWENMHKC  420
TVKRTKEFTR EQLTSCTATV DFVNQGNDTI VDHLATVNNI PDGNADEKDK HEDMKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006367058.2	0.0	PREDICTED: trihelix transcription factor GTL2-like
TrEMBL	M1D3T6	0.0	M1D3T6_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400080676	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11622	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	3e-32	Trihelix family protein