|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sme2.5_15235.1_g00002.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
Family |
M-type_MADS |
Protein Properties |
Length: 343aa MW: 38390.7 Da PI: 9.8334 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_15235.1_g00002.1 | genome | EGD | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 37.9 | 2.3e-12 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
ien+ +v++ kR +g+l KA EL +L dae+a ii+s+
Sme2.5_15235.1_g00002.1 11 IENENEGKVSYKKREKGLLTKADELGILRDAEIAAIIYSP 50
9**************************************8 PP
|
Protein Features
? help Back to Top |
|
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 9.2E-13 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.825 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.84E-17 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.37E-17 | 3 | 84 | No hit | No description |
Pfam | PF00319 | 5.4E-12 | 11 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-8 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene3D | G3DSA:3.80.10.10 | 9.2E-35 | 156 | 329 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SuperFamily | SSF52058 | 2.81E-31 | 157 | 325 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF13855 | 1.9E-8 | 175 | 217 | IPR001611 | Leucine-rich repeat |
SMART | SM00369 | 0.0032 | 181 | 204 | IPR003591 | Leucine-rich repeat, typical subtype |
PROSITE profile | PS51450 | 7.727 | 183 | 204 | IPR001611 | Leucine-rich repeat |
PRINTS | PR00019 | 2.3E-5 | 184 | 197 | No hit | No description |
PROSITE profile | PS51450 | 5.779 | 206 | 228 | IPR001611 | Leucine-rich repeat |
PRINTS | PR00019 | 2.3E-5 | 252 | 265 | No hit | No description |
SMART | SM00369 | 24 | 252 | 276 | IPR003591 | Leucine-rich repeat, typical subtype |
PROSITE profile | PS51450 | 5.009 | 254 | 277 | IPR001611 | Leucine-rich repeat |
PROSITE profile | PS51450 | 5.263 | 278 | 299 | IPR001611 | Leucine-rich repeat |
Sequence ? help Back to Top |
Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MPRKKVKFAL IENENEGKVS YKKREKGLLT KADELGILRD AEIAAIIYSP YKNEPTVFSN 60 HGSAVNTLTK FKELLANDRS KKMVTKDEFT MKRIQKMNEK LIKKNLKQVH EAMKKKIGEE 120 GYTSNFPQSI VGPMRFELSG VMLWYGACLK VAIIPDKNVV NLTAKSFGLS GVILDNTIGK 180 LTKLKYLDLS NNKLTGFPSD IWSLGSLKYL NLLHNHISGD LSRNIGNFGV LEIMEFSINN 240 LFGKIPEAIS SLSSLHSLNL SKNMFDSEIL SGILRCHSLE SLDLLENRLT GFLYGNLFKG 300 SVVGLFEGVL EVIDLSRNQF DGHISQTLGI RNMSWIGLAL ELV
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | HG975446 | 1e-150 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |