PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_13766.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 301aa    MW: 33142.6 Da    PI: 10.5219
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_13766.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.4e-12100144347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +W++eE++ ++ + ++lG+g+W+ I+++    Rt+ q+ s+ qky
  Sme2.5_13766.1_g00002.1 100 SWSEEEHKYFLMGLEKLGKGDWRGISKHYVSSRTPTQVASHAQKY 144
                              7*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565924IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.31493149IPR017930Myb domain
SuperFamilySSF466898.22E-1794149IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-1696147IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.1E-1097143IPR009057Homeodomain-like
SMARTSM007176.6E-1197147IPR001005SANT/Myb domain
PfamPF002496.7E-11100144IPR001005SANT/Myb domain
CDDcd001674.18E-9100145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MVSMVKDARK CSHCGHNGHN SRTCNSKGVG GIKLFGVRID NNNNNYDTKM KIESYESIRR  60
SKSLGNLEHA ANYDHNGSTE AGYLSDGLIH SPRHRKKGTS WSEEEHKYFL MGLEKLGKGD  120
WRGISKHYVS SRTPTQVASH AQKYFIRMAS IDKKKRRPSV FDVHLKEPNS PILPKSSPSI  180
SNKVPQVSKE GIKGVAGATC VRPPLSPSRP FGVPSLHHMP YMAGVGRNIQ GVTTGKVGAT  240
ISWIPVVFQN QSHGHVGNYS QYPAFVARPT ISLSSRPSSQ VQSQADHSTT MTNKDGLKCL  300
H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152156KKKRR
2152157KKKRRP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754452e-59HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169157.11e-143PREDICTED: transcription factor MYB1R1-like
SwissprotQ9FKF91e-50M5162_ARATH; Probable transcription factor At5g61620
TrEMBLM1BY821e-148M1BY82_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000556161e-149(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117831823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.15e-53MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]