PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_12679.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20325.6 Da    PI: 10.5639
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_12679.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.52.6e-211663249
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             +ie k   qvtfskRr g++KKA+EL++LC++e+a+++fs+  k++ +
  Sme2.5_12679.1_g00002.1 16 KIEVKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPARKVFSF 63
                             58888899**********************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-31766IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-26779IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.193767IPR002100Transcription factor, MADS-box
CDDcd002658.78E-31874No hitNo description
PRINTSPR004041.0E-17929IPR002100Transcription factor, MADS-box
PfamPF003199.0E-241663IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-172944IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-174465IPR002100Transcription factor, MADS-box
Gene3DG3DSA:3.30.930.106.0E-799136No hitNo description
SuperFamilySSF556818.7E-899162No hitNo description
PfamPF001524.7E-5101148IPR004364Aminoacyl-tRNA synthetase, class II (D/K/N)
Gene3DG3DSA:3.30.1360.306.7E-18137179IPR004115GAD-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006418Biological ProcesstRNA aminoacylation for protein translation
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0004812Molecular Functionaminoacyl-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MAKKPSMGRR KIKIAKIEVK NHLQVTFSKR RSGLFKKASE LCTLCGVEIA IVVFSPARKV  60
FSFGHPNVES ITERLMRLTT RVYAARYGNG FHFYGGHAEA QEDLIRKVFQ EILGVQLPNP  120
FPRLTYAEAM SRYGSDRPDT RFDVELRDAS SIFSNSTFKV FSDTLASGGI IKALCVPSGA  180
KT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1efw_A2e-1899177252326ASPARTYL-TRNA SYNTHETASE
1efw_B2e-1899177252326ASPARTYL-TRNA SYNTHETASE
1g51_A2e-1899177252326ASPARTYL-TRNA SYNTHETASE
1g51_B2e-1899177252326ASPARTYL-TRNA SYNTHETASE
1l0w_A2e-1899177252326Aspartyl-tRNA synthetase
1l0w_B2e-1899177252326Aspartyl-tRNA synthetase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2402044e-75AC240204.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-33m2 map 1, complete sequence.
GenBankHG9755134e-75HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628464.22e-44PREDICTED: agamous-like MADS-box protein AGL62
RefseqXP_016464596.15e-44PREDICTED: agamous-like MADS-box protein AGL62, partial
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-32AGAMOUS-like 62