PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_12679.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 321aa    MW: 36579.8 Da    PI: 6.4418
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_12679.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.95.3e-18550449
                             -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             + +sn  vtfskRr g++KKA+EL +LC++e+ +++fs+  k++ +
  Sme2.5_12679.1_g00001.1  5 SKESNLLVTFSKRRSGLFKKASELYTLCGVEITIVVFSPGHKVFSF 50
                             6678999********************************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-16153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.726154IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-20269IPR002100Transcription factor, MADS-box
PfamPF003197.4E-21450IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-81631IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-83152IPR002100Transcription factor, MADS-box
PfamPF075391.7E-10129215IPR011430Down-regulated-in-metastasis protein
CDDcd122541.48E-18257311No hitNo description
SuperFamilySSF549282.74E-12258318IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3303.3E-13258317IPR012677Nucleotide-binding alpha-beta plait domain
PfamPF000766.8E-5260308IPR000504RNA recognition motif domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MTKMSKESNL LVTFSKRRSG LFKKASELYT LCGVEITIVV FSPGHKVFSF GHPNVDSIIN  60
RFLTRNPTSS STTCQLVEAH RNANVRELNA QLSAILNQLE FEKKREIEIE KIKKAKIGKN  120
WWENPVFVVL NAHLLRELNA TSTVELGDLD YDTVIAAYEK ISADFFHTAP EEHALIILSH  180
AIHDMSSGDL ILRQSAYRLL LSFVEFSSQM LNRELKYEQE STGAWVWIDL LRDMVLKLPT  240
VENFKSFAVL YSEDPEQDFF NNIVHLQVHI AYRSDGKATG EAYVEFASAE QAKKAMCKDN  300
MKIGSRYIEL FPSHPDEPAN I
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-125HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-40AGAMOUS-like 62