PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_12535.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 119aa    MW: 13554.9 Da    PI: 11.9603
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_12535.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.11.3e-241059251
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             rie+ks r+v f+kRr+g++KKA+ LS+LCda+va++i+s++g+l+e+ss
  Sme2.5_12535.1_g00003.1 10 RIEEKSSREVAFCKRRKGLIKKANQLSILCDADVALVIISNRGRLHEFSS 59
                             8***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.006161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-24160IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-30160IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-24323IPR002100Transcription factor, MADS-box
PfamPF003195.9E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-243859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MGRRKLEIRR IEEKSSREVA FCKRRKGLIK KANQLSILCD ADVALVIISN RGRLHEFSSN  60
IRVRGRAQPQ GSIVRRLTLH FCQRLFPRLE PVTSWSHGSN STGCSKAPLL KSFKFPPIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-14160160Myocyte-specific enhancer factor 2B
1tqe_Q4e-14160160Myocyte-specific enhancer factor 2B
1tqe_R4e-14160160Myocyte-specific enhancer factor 2B
1tqe_S4e-14160160Myocyte-specific enhancer factor 2B
6c9l_A4e-14160160Myocyte-specific enhancer factor 2B
6c9l_B4e-14160160Myocyte-specific enhancer factor 2B
6c9l_C4e-14160160Myocyte-specific enhancer factor 2B
6c9l_D4e-14160160Myocyte-specific enhancer factor 2B
6c9l_E4e-14160160Myocyte-specific enhancer factor 2B
6c9l_F4e-14160160Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU8366434e-37KU836643.1 Capsicum annuum clone BAC422K18, complete sequence.
GenBankKU8366444e-37KU836644.1 Capsicum annuum clone BAC547H22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170242.13e-27PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
SwissprotQ2QW536e-22MAD13_ORYSJ; MADS-box transcription factor 13
TrEMBLM1BI802e-26M1BI80_SOLTU; Uncharacterized protein
TrEMBLM1BI813e-26M1BI81_SOLTU; Uncharacterized protein
TrEMBLM1BI825e-26M1BI82_SOLTU; Uncharacterized protein
TrEMBLQ6UGR21e-26Q6UGR2_PETHY; MADS-box protein 17 (Fragment)
STRINGPGSC0003DMT4000458049e-27(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.12e-16MIKC_MADS family protein
Publications ? help Back to Top
  1. Gindullis F,Rose A,Patel S,Meier I
    Four signature motifs define the first class of structurally related large coiled-coil proteins in plants.
    BMC Genomics, 2002. 3: p. 9
    [PMID:11972898]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Yamaki S,Satoh H,Nagato Y
    Gypsy embryo specifies ovule curvature by regulating ovule/integument development in rice.
    Planta, 2005. 222(3): p. 408-17
    [PMID:16001259]
  4. Dreni L, et al.
    The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice.
    Plant J., 2007. 52(4): p. 690-9
    [PMID:17877710]
  5. Yamaki S,Nagato Y,Kurata N,Nonomura K
    Ovule is a lateral organ finally differentiated from the terminating floral meristem in rice.
    Dev. Biol., 2011. 351(1): p. 208-16
    [PMID:21146515]
  6. Li H,Liang W,Yin C,Zhu L,Zhang D
    Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy.
    Plant Physiol., 2011. 156(1): p. 263-74
    [PMID:21444646]
  7. Li H, et al.
    Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
    Plant Cell, 2011. 23(7): p. 2536-52
    [PMID:21784949]