PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_11459.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 115aa MW: 13618.5 Da PI: 7.6763 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 30.4 | 1.1e-09 | 42 | 112 | 26 | 97 |
DUF573 26 tgkspsddidafyefvkksi.sfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 t ++ ++ f+k+s+ ++k+s ++l eKi L k+f + +++ +g++p+++++ d++if+ls ++Wg Sme2.5_11459.1_g00002.1 42 TWNALQSSFNNQLIFIKNSLpDLKISIEDLEEKITALGKRFIDVREQ--HGDDPEMAQTIDREIFNLSIRLWG 112 444444466667778888884589**********************9..***********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 7.4E-7 | 19 | 112 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 115 aa Download sequence Send to blast |
MPRRDMHRNH VDPTYDHEAL LEGFISSAKR KVRTISDYKC ITWNALQSSF NNQLIFIKNS 60 LPDLKISIED LEEKITALGK RFIDVREQHG DDPEMAQTID REIFNLSIRL WGRRY |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | M1DMN8 | 2e-26 | M1DMN8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400091462 | 3e-27 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17221 | 5 | 5 |