PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_11365.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 475aa    MW: 55055 Da    PI: 9.1143
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_11365.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.3e-1519931397
                             TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                       B3 13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                             ++ l +p  f+ ++  g   e+++  l  ++g++W vk+  ++++    +++GWk+Fvk+++L+ gD ++F++dg++ef   v+vf
  Sme2.5_11365.1_g00001.1 19 KDGLNIPIGFL-NYlRGY--EHIKRALLKKDGKKWLVKV--NGRR----FKRGWKKFVKDHDLQLGDLLIFRHDGDMEF--DVSVF 93
                             34599999999.555444..456788999**********..8887....9************************99999..77666 PP
2B343.75e-14174256690
                              ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                       B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                              ++++ ++ g l++pk    ++g++++++ +l ++de+  sW++kl    ++ ++++++GW++F  ++ Lk+gD ++F+ + +s++
  Sme2.5_11365.1_g00001.1 174 IKPYCFTYGYLRIPKYVPFANGLITNKKCDLLIRDEKQSSWNLKL--HSCKTQTFIGDGWRKFSADKCLKVGDRIMFEIVTDSDT 256
                              6788999999****988778999999999****************..999999*************************8776554 PP
3B352.77.9e-17364445590
                              -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                       B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                              ++++++ +++ l +p  f++++g+    + +++l+de+ rsW v+l  +k+s r+ +t+G  +F kang+++gD+  F+l+++++ 
  Sme2.5_11365.1_g00001.1 364 TIKPYNINRSYLHVPIAFIKSNGLM--DQHEMILRDEKQRSWLVQL--SKRSLRIAMTRGLHQFMKANGVQVGDTYKFELIDNKTM 445
                              56899999**************877..4458***************..*******************************9985433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-20495IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-205101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.76796IPR003340B3 DNA binding domain
CDDcd100172.09E-16893No hitNo description
SMARTSM010191.4E-161096IPR003340B3 DNA binding domain
PfamPF023621.5E-111991IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-14166262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-14167262IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.6E-5170264IPR003340B3 DNA binding domain
PfamPF023629.2E-12173257IPR003340B3 DNA binding domain
CDDcd100171.33E-7182249No hitNo description
PROSITE profilePS5086310.207204267IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-22354450IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-20356451IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-13360450No hitNo description
PROSITE profilePS5086311.35360453IPR003340B3 DNA binding domain
SMARTSM010196.2E-16361453IPR003340B3 DNA binding domain
PfamPF023625.0E-15363445IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MKLPPKKPHF IKPILPGFKD GLNIPIGFLN YLRGYEHIKR ALLKKDGKKW LVKVNGRRFK  60
RGWKKFVKDH DLQLGDLLIF RHDGDMEFDV SVFYSTHRDR EYAEYLQIEQ EQKQEDDDDD  120
DDDEEEAHTA EENSTDFELE EKPRPSIESS DKSSFHSEAA AHKPFGHSSF ICNIKPYCFT  180
YGYLRIPKYV PFANGLITNK KCDLLIRDEK QSSWNLKLHS CKTQTFIGDG WRKFSADKCL  240
KVGDRIMFEI VTDSDTPIWK FRVVTDAKTP MRKFQENARE KPKPNVMSSH KDFLDVEAAN  300
DMPRDRPHFI YTIKHSTISK YMLPEEKPNL DANRVSAQGL VMHAPKAHAP ALASANSNSH  360
FVSTIKPYNI NRSYLHVPIA FIKSNGLMDQ HEMILRDEKQ RSWLVQLSKR SLRIAMTRGL  420
HQFMKANGVQ VGDTYKFELI DNKTMHVVHF PYGVAPFLTS LKECFPPMGP YVAQI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085025.11e-156B3 domain-containing protein REM10-like
TrEMBLA0A1S3ZYN21e-141A0A1S3ZYN2_TOBAC; B3 domain-containing protein REM10-like isoform X2
STRINGSolyc08g006200.1.11e-155(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.12e-35B3 family protein