PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_11033.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 332aa MW: 37726.5 Da PI: 4.8131 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.2 | 7e-09 | 215 | 260 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ r+RR++i ++ ++L +l+P +++ ae+L+ + +YIk Lq Sme2.5_11033.1_g00001.1 215 QSIAARQRRKKITDKTQKLGKLIPGgH------RMNTAEMLQATFKYIKFLQ 260 57889*******************955......9*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.22E-11 | 207 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.02E-10 | 208 | 262 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-11 | 209 | 263 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.919 | 210 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-6 | 215 | 260 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.7E-9 | 216 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MASVSYCSAA KLEPNVQEFD SEEMRIMQEL LFNFNYDVEP NFHENTDQDC YIDPFFNPDE 60 FILSFEMNNN SCFMPEYSVY EKQQDNCLPD NITTMTTHNS CFVPEYSVYE STTKRQKVIH 120 DNFLPNNIIA PSTHTPSFMP EYSVFASTPK RQEDNFLPPP SLGFVPNPPF FQDFASYSLS 180 EIPMPVFSSG CCNNAGAVAK KGGGNSSNEK KMSAQSIAAR QRRKKITDKT QKLGKLIPGG 240 HRMNTAEMLQ ATFKYIKFLQ AQAGLLEFMG SYEDEKSFHT SDLQKLVGST LIQEKLYSSE 300 KCLVPKVFLE ALENSQEFQN SLVLEEVKSL TR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 2e-69 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016541148.1 | 1e-156 | PREDICTED: transcription factor bHLH53-like | ||||
TrEMBL | A0A2G3DDP6 | 1e-156 | A0A2G3DDP6_CAPCH; Transcription factor bHLH87 | ||||
STRING | PGSC0003DMT400053651 | 1e-155 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3856 | 22 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 5e-22 | bHLH family protein |