 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sme2.5_10858.1_g00003.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 229aa MW: 25858.4 Da PI: 7.1025 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_10858.1_g00003.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 83.2 | 1.6e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien s rqvtfskRr+g++KKAeELS+LCdae+ vi+fs+t++ly ++s
Sme2.5_10858.1_g00003.1 9 KKIENISSRQVTFSKRRAGLFKKAEELSILCDAEIGVIVFSNTDRLYKFAS 59
68***********************************************86 PP
|
| 2 | K-box | 58.1 | 3.9e-20 | 82 | 158 | 13 | 88 |
K-box 13 kaesl.qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88
+ e+ + el+ Lk+e+ +L++ R+++G++L+ L++keLqqLe+qL +++ ++++kK+++lle +e++ + +el
Sme2.5_10858.1_g00003.1 82 TIENVeEPELNSLKAEVAKLRTATRRMKGKELDGLDFKELQQLEHQLTEGILSVKNKKEQVLLEILEKSNLQIEELG 158
444441569*******************************************************9999887777765 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 30.782 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 1.2E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 5.78E-38 | 2 | 77 | No hit | No description |
| SuperFamily | SSF55455 | 1.57E-29 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.4E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.4E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.4E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 9.944 | 84 | 175 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 1.2E-13 | 88 | 157 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009555 | Biological Process | pollen development |
| GO:0009910 | Biological Process | negative regulation of flower development |
| GO:0048577 | Biological Process | negative regulation of short-day photoperiodism, flowering |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MGRGKIEMKK IENISSRQVT FSKRRAGLFK KAEELSILCD AEIGVIVFSN TDRLYKFASS 60
KSSLEKIVDR YNNSSHSCEH PTIENVEEPE LNSLKAEVAK LRTATRRMKG KELDGLDFKE 120
LQQLEHQLTE GILSVKNKKE QVLLEILEKS NLQIEELGHK SCNHYPENYE AARKISVGNS 180
TVICDDKSVR EETSDTSLSL GLSVATSQKK KHPKIECTSN DSENLMILD
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975449 | 2e-71 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
