PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_10699.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 257aa    MW: 27685.1 Da    PI: 8.2888
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_10699.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00056138160123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C+ C+++F++   L  H  +H
  Sme2.5_10699.1_g00002.1 138 YECKTCNRTFPSFQALGGHRASH 160
                              99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.45E-5136165No hitNo description
PfamPF139122.2E-13137162IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.658138165IPR007087Zinc finger, C2H2
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEVLSQNFPD RSCAFKGKRT KRSRPSSPLN TAGTMIVTST SSSVAGGSDD DDIGDGGGTG  60
GDFDNSTNIQ YSPTTSTNQI STTSTSEEDE DMANCLILLA QSGYGHKVNK KEKIGSRKFA  120
EITTCDNSKN GKAGVYVYEC KTCNRTFPSF QALGGHRASH KKPKTIVEEK KTVTINTDSV  180
TVTATATTTA AAVATAVVNH DSHDLQEQGR LNNITNQTVV NNNNNNKIKL HECSICGSXX  240
WIGVFIRTSV RWTHEKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057800.12e-73zinc finger protein ZAT5
TrEMBLA0A1U8ERT86e-70A0A1U8ERT8_CAPAN; Uncharacterized protein
TrEMBLA0A2G2YHK26e-70A0A2G2YHK2_CAPAN; zinc finger protein ZAT5
STRINGSolyc11g066400.1.11e-70(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.17e-26C2H2 family protein