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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_10605.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 827aa MW: 93426.7 Da PI: 8.8236 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.5e-20 | 632 | 681 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae Aa a+++a+++++g Sme2.5_10605.1_g00001.1 632 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAALAYDEAALRFKG 681 7********.**********94....45************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.130.10.10 | 2.0E-25 | 238 | 542 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 0.47 | 255 | 294 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 8.729 | 261 | 546 | IPR017986 | WD40-repeat-containing domain |
SuperFamily | SSF50978 | 1.78E-30 | 272 | 548 | IPR017986 | WD40-repeat-containing domain |
SMART | SM00320 | 190 | 306 | 348 | IPR001680 | WD40 repeat |
SMART | SM00320 | 30 | 357 | 397 | IPR001680 | WD40 repeat |
SMART | SM00320 | 11 | 406 | 444 | IPR001680 | WD40 repeat |
SMART | SM00320 | 24 | 500 | 537 | IPR001680 | WD40 repeat |
Gene3D | G3DSA:3.30.730.10 | 3.0E-32 | 631 | 690 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.974 | 632 | 689 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-13 | 632 | 681 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.26E-19 | 632 | 690 | No hit | No description |
SMART | SM00380 | 2.1E-38 | 632 | 695 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-21 | 632 | 690 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.4E-11 | 633 | 644 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.4E-11 | 655 | 671 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 827 aa Download sequence Send to blast |
MNKPPKPQND KEEEEKLNGS RREEQDRMEQ EEALIALIEH RTKEVEHLRQ CITYYKSQFN 60 EAENRLEETQ LKLARLRGRE NIAASGSSCG NRESPVTSKR RSTSPIQIIE GSSHSLFASK 120 PHRIQGTNPP LRKSPAPDRG MASPFQKNEY SSCSMPQAKP PLIIPDVKPR VSQPLKMTES 180 GPKNPSASDF QAGGSGFAHV TGMKKLKADT SHRKPENEAS EIQPKGTKRK FEQKEHRELI 240 PLIGTYSSAS MIRCQTSCVI SSQHKRKLRT IISCPTNDQL FASSALDGLV NLWQIHGRGS 300 TANLLSSTDC LSSKHRRWPE DVAWHPEGDS LFSVYSADGG DSQISILNLN KGKEKMRVSF 360 LEEKPHVKGM INNIIFMPWE DIQFVTGGSD HAVIMWSNKD GENSWKPKAL HRSFHSSAVM 420 GVAGLQHKKV VMSAGADKRI IGFDLLAQRA EYKHQIESKC MSVLPNPCDF NLFMVQTGTI 480 ERQLRLFDFR LRQTEVHAFG WKQESSDSQS ALINQAWSPD GLYITSGSVD PVIHIFDIRK 540 QFLPSNFVDI IEKTVIVDPR HGKRPYESEE KEESVFPVYS ARSQYDMSAM VSVLSQVIAN 600 TNSSSHELHP LTLPQTTTNQ IQQQGNQERK RHYRGVRQRP WGKWAAEIRD PKKAARVWLG 660 TFDTAEAAAL AYDEAALRFK GNKAKLNFPE RVQSGNTQYL TTPHHHQQQQ LLDHHQQNYS 720 FSNNNELIPQ MVTQPNLYQQ HFPNVHQYAQ LLHGGSNNNI DHMMNFGVSE PHFYNHHQQS 780 SSGGNFVSSN LQQQQPSYHH NQEEDFLGFP MDFGNSSTST GPPSGSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-27 | 629 | 695 | 2 | 69 | ATERF1 |
3gcc_A | 5e-27 | 629 | 695 | 2 | 69 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 1e-171 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006346631.1 | 0.0 | PREDICTED: uncharacterized protein LOC102592668 isoform X2 | ||||
TrEMBL | A0A1U8EV04 | 0.0 | A0A1U8EV04_CAPAN; uncharacterized protein LOC107850764 isoform X1 | ||||
STRING | Solyc12g042200.1.1 | 0.0 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07310.1 | 6e-41 | ERF family protein |