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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sme2.5_09817.1_g00003.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
C2H2 |
| Protein Properties |
Length: 536aa MW: 60043.1 Da PI: 6.0996 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_09817.1_g00003.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 21 | 9e-07 | 284 | 305 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
C++Cgk F+r nL+ H+r H
Sme2.5_09817.1_g00003.1 284 FCTICGKGFKRDANLRMHMRGH 305
6*******************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010044 | Biological Process | response to aluminum ion |
| GO:0010447 | Biological Process | response to acidic pH |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 536 aa
Download sequence Send
to blast |
MLVEVLLFFF VLLLPREADS DMDPDDSLSE DAWIKSSSSD NELLKIMPSD NHSFTNLNLH 60
AQKWEGSSYL DQQIRIEQQF SGITKPKHTY EMDQQRNQWN ENHDTTRIND WDPRALLNNL 120
SFLEQKVHQL QELVHLIVGR RGQDGVQGND LIVQQQQLIT ADLTSIIVQL ISTAGSLLPT 180
MKHTLSSAIP AASQFGQVGG VTGPSTTGTS AGGLTCSNDS VAKVEDQSNH IDQLRDCGIE 240
QNHAVDEHEL KDEDEAEEEE NLPPGSYEIL QLEKEEILAP HTHFCTICGK GFKRDANLRM 300
HMRGHGDEYK TPAALAKPHK EPSSEPTLIK RYSCPFVGCK RNKEHKKFQP LKTILCVKNH 360
YKRTHCEKAY TCSRCNIKKF SVIADLKTHE KHCGKDKWLC SCGTTFSRKD KLFGHISLFQ 420
GHTPAISPDE TKGSAAGTSD RGQTSEVTMK ALQENYKVNA SNGNEFQNPG VVKEGAYSPS 480
SYFSPLNFDT SNLNGFQEFP RPPFDESDSS FSFLLSGSCE YPPHKAAKFM SSTEME
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975523 | 0.0 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
| Publications
? help Back to Top |
- Kobayashi Y, et al.
Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions.
Plant Physiol., 2013. 163(1): p. 180-92
[PMID:23839867] - Yokosho K,Yamaji N,Ma JF
Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench).
Plant Cell Physiol., 2014. 55(12): p. 2077-91
[PMID:25273892] - Geng X, et al.
LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis.
Plant J., 2017. 90(3): p. 491-504
[PMID:28181322] - Balzergue C, et al.
Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation.
Nat Commun, 2017. 8: p. 15300
[PMID:28504266] - Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A
Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation.
Front Plant Sci, 2017. 8: p. 822
[PMID:28567051] - Jiang F, et al.
Identification and characterization of suppressor mutants of stop1.
BMC Plant Biol., 2017. 17(1): p. 128
[PMID:28738784] - Daspute AA, et al.
Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms.
Front Plant Sci, 2017. 8: p. 1358
[PMID:28848571] - Sharma A,Wai CM,Ming R,Yu Q
Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis.
Genome Biol Evol, 2017. 9(9): p. 2170-2190
[PMID:28922793] - Zhang Y, et al.
The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis.
Front Plant Sci, 2018. 9: p. 118
[PMID:29491872]
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