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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_09577.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 1408aa MW: 158213 Da PI: 5.4019 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 249.4 | 1.4e-76 | 352 | 590 | 1 | 241 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 l++lL+ cA+av++g+++ a++lL+++++++sp+gd mqRla+yf+ +L+ar a+s++++yka+ +++ s +++l+a++l+ Sme2.5_09577.1_g00004.1 352 LRTLLTLCAQAVAEGNQRTANELLKKIRQNSSPTGDGMQRLAHYFADGLEARAAGSGTHIYKAFITQPVS---ATDVLKAYHLLLA 434 5789************************************************************999999...99*********** PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170 ++P+ ++s l N++I++ +e++++vHiiD++i+ G+QWp L+q L+sRp gpp+lRiTg++ p++g +e++eetg+rLa++A+ Sme2.5_09577.1_g00004.1 435 TCPFRTISSLFSNKTIMNLAEKASTVHIIDIGIMWGFQWPGLIQRLSSRPCGPPKLRITGIDFPNPGfrPAERVEETGRRLANYAD 520 ******************************************************************9******************* PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241 +++vpfefn+ +a+++e+++le+L++k+gE+l+Vn+ ++ +llde+v ++s+rd +L+++++l+P+v+++ Sme2.5_09577.1_g00004.1 521 SFNVPFEFNA-IAQKWETVKLEDLKIKKGEVLVVNCLYRFRNLLDETVVVNSPRDVFLNFIRRLNPDVFIL 590 **********.7********************************************************987 PP | |||||||
2 | GRAS | 37.4 | 3.7e-12 | 594 | 658 | 301 | 366 |
GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366 +gaer+er et+++W+ rl++aGF++ pl+e++ a + ++++ ++++ +s++l++gWk+r+ Sme2.5_09577.1_g00004.1 594 NGAERIERPETYKQWQVRLQKAGFRQFPLDEEIIRIATERYQAYDKN-FMIDVDSEWLLQGWKGRN 658 689******************************************66.***************985 PP | |||||||
3 | GRAS | 382.7 | 4.3e-117 | 1035 | 1405 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 l++lL+ cA+av+ g+ +a++lL+++++ +sp+gd mqRla+yf+ +L+ar+a+s++++ykal +++ s +++l+a++l+ Sme2.5_09577.1_g00004.1 1035 LRTLLTLCAQAVAVGNRMAANELLKQIRQSSSPTGDGMQRLAHYFADGLEARIAGSGTHIYKALITRPVS---AIDVLKAYHLL 1115 5789****************************************************************99...9********** PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166 ++P+ ++s + N++I++ +e+++ vHiiD++i+ G+QWp L+q L+sRp+gpp+lRiTg++ p++g +e++eetg+rLa Sme2.5_09577.1_g00004.1 1116 LAICPFRTLSSFFSNKTIMNLAEKASIVHIIDIGIMWGFQWPGLIQLLSSRPGGPPKLRITGIDFPNPGfrPAERVEETGRRLA 1199 ********************************************************************9*************** PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250 ++A++++vpfefn+ +a+++e+++le+L++++gE+l+Vn+ ++ +llde+v +s+rd +L+++++l+P+v++ + +n+ Sme2.5_09577.1_g00004.1 1200 NYADSFKVPFEFNA-IAQKWETVKLEDLKIDKGEVLVVNCLFRFRNLLDETVVANSPRDVFLNFIRRLNPDVFIQGITNGAYNA 1282 **************.7******************************************************************** PP GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334 + F rf +al +ys+lfd+le+ +pre +er+ vE+ +lg+e++nv+acegaer+er et+++W+ rl +aGF+++pl+e+++ Sme2.5_09577.1_g00004.1 1283 PLFISRFRQALFHYSSLFDMLETIIPREVHERMLVEKNILGQEAMNVIACEGAERIERPETFKQWQVRLLKAGFRQLPLDEEIV 1366 ************************************************************************************ PP GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + ++++++ ++++ +s++l++gWk+r +++S W+ Sme2.5_09577.1_g00004.1 1367 RMMTERFKEYDKN-FMIDADSEWLLQGWKGRIGYALSTWK 1405 ***********66.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.257 | 326 | 590 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.0E-74 | 352 | 590 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-9 | 594 | 658 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 67.292 | 1009 | 1386 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-114 | 1035 | 1405 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 1408 aa Download sequence Send to blast |
MGQYVEGSAI NLEDEACSFF PDPDLMSNLS VSDNLVNKNI DISPFQSDVG PNSLVPSTAD 60 DFHEDYDFSD GALKYIHQML MEEDIEEKTC MFQESAALQA AERSFYEVIG EEYPSSANHE 120 NPSSLAQNEH YTMDLRNDGC DGLLCPSWIL DLGEGDEPRV PDGVALHSTS WSSHGLSGAI 180 TNVLVDYPVN TLRVPDIFSD NESIMQFKKE VEEASKFLPT GNSLLSDVRY DIVGKKLQYE 240 ERKDAVVPVE KYGEKQSPER SRGKKNTLHE DIVDSTEGRN NKQSAVFTES TVRSEMFDRV 300 LLCSGGKNES ALRETLQAIS RQNASENGPS KGSNSKKLQG KKRGGKRDVV DLRTLLTLCA 360 QAVAEGNQRT ANELLKKIRQ NSSPTGDGMQ RLAHYFADGL EARAAGSGTH IYKAFITQPV 420 SATDVLKAYH LLLATCPFRT ISSLFSNKTI MNLAEKASTV HIIDIGIMWG FQWPGLIQRL 480 SSRPCGPPKL RITGIDFPNP GFRPAERVEE TGRRLANYAD SFNVPFEFNA IAQKWETVKL 540 EDLKIKKGEV LVVNCLYRFR NLLDETVVVN SPRDVFLNFI RRLNPDVFIL GIVNGAERIE 600 RPETYKQWQV RLQKAGFRQF PLDEEIIRIA TERYQAYDKN FMIDVDSEWL LQGWKGRNSS 660 LFWMFTHHLP PNLTGYVVVV VTGVQPLDWM KIDIMGQYEA GSAIELEDEA CSFFPDVNLM 720 NNLSVSDDLV NKKIDVSPFQ SDVERDSLVP STADGFHEDY DLNDGVLKYI HQMLMEEDIE 780 EKTCMFQESA ALQAAERSFY EVIGEKYPSS SNQEKPYSLG RNERYAMDLS SFHFCGNGGL 840 DLDEDDVSRV CHVPDGVALS GAVANVPVDS PVSTLRVPDI FNDGVSIMQF KKGVEEASKF 900 LPSGSSLLAG VRYDVVGKEL QYEEIIDAVV KVEKHGEKQS PQRSRGKKNA LHEDIVDLTE 960 GRNNKQSAVF TESTVRSEMF DRVLLCSAGE NESALRKTFK AVSRKNASEN GPSKGPNGRK 1020 LQGKKKGGKR DVVDLRTLLT LCAQAVAVGN RMAANELLKQ IRQSSSPTGD GMQRLAHYFA 1080 DGLEARIAGS GTHIYKALIT RPVSAIDVLK AYHLLLAICP FRTLSSFFSN KTIMNLAEKA 1140 SIVHIIDIGI MWGFQWPGLI QLLSSRPGGP PKLRITGIDF PNPGFRPAER VEETGRRLAN 1200 YADSFKVPFE FNAIAQKWET VKLEDLKIDK GEVLVVNCLF RFRNLLDETV VANSPRDVFL 1260 NFIRRLNPDV FIQGITNGAY NAPLFISRFR QALFHYSSLF DMLETIIPRE VHERMLVEKN 1320 ILGQEAMNVI ACEGAERIER PETFKQWQVR LLKAGFRQLP LDEEIVRMMT ERFKEYDKNF 1380 MIDADSEWLL QGWKGRIGYA LSTWKAAY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 5e-53 | 359 | 1404 | 25 | 377 | Protein SCARECROW |
5b3h_D | 5e-53 | 359 | 1404 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015075133.1 | 0.0 | scarecrow-like protein 30 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | M1CLG2 | 0.0 | M1CLG2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400069949 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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