![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_09576.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 22825.5 Da PI: 6.5172 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.6e-17 | 38 | 87 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ + +Wv+e r+p++ +kr++lg++ tae+Aa+a++ a+++l+g Sme2.5_09576.1_g00003.1 38 IYRGVRRRN-NDKWVCEMREPTN---QKRIWLGSYPTAEMAARAHDVAALALKG 87 69****887.8*********864...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-12 | 37 | 87 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.28E-29 | 37 | 97 | No hit | No description |
PROSITE profile | PS51032 | 21.364 | 38 | 95 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-28 | 38 | 97 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-28 | 38 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-20 | 38 | 97 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.2E-7 | 39 | 50 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-7 | 61 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 200 aa Download sequence Send to blast |
MDNYSSNVYS DKESYLLASS NPKKRAGRKK FKETRHPIYR GVRRRNNDKW VCEMREPTNQ 60 KRIWLGSYPT AEMAARAHDV AALALKGPLA TLNFADSAWR VEVPVSKDPK VLRQAAARAA 120 EVFAIEPIDV PQLNNNNNVV AHEENSASNI YSNSCGIEEW QANMEEECLF SPNPCLFERN 180 FSWDDHVESN VEVSLWSYSI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00001 | PBM | Transfer from 471409 | Download |
![]() |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015159272.1 | 1e-90 | PREDICTED: dehydration-responsive element-binding protein 1E-like | ||||
Refseq | XP_025884427.1 | 8e-91 | dehydration-responsive element-binding protein 1E-like | ||||
Swissprot | Q9SGJ6 | 1e-56 | DRE1E_ARATH; Dehydration-responsive element-binding protein 1E | ||||
TrEMBL | M0ZYP1 | 7e-90 | M0ZYP1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400010876 | 1e-90 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G63030.2 | 2e-45 | ERF family protein |