PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_09415.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NF-YB | ||||||||
Protein Properties | Length: 203aa MW: 22631.5 Da PI: 6.2316 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 161.8 | 9.7e-51 | 56 | 149 | 2 | 95 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 reqdrf+Pianv+rim+++lP++akis+d+k+++qecvsefisf+t ea+d+c++e+rkti+++d+lwa++++G++dy+epl++yl Sme2.5_09415.1_g00004.1 56 REQDRFMPIANVVRIMRRILPSHAKISDDSKQLIQECVSEFISFITMEANDRCKHEQRKTITAEDILWAMSKIGLDDYIEPLTLYL 141 89************************************************************************************ PP NF-YB 88 kkyreleg 95 ++yre++ Sme2.5_09415.1_g00004.1 142 QRYREFDY 149 *****975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.0E-46 | 52 | 149 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.74E-36 | 58 | 151 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-25 | 61 | 125 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.4E-15 | 89 | 107 | No hit | No description |
PRINTS | PR00615 | 3.4E-15 | 108 | 126 | No hit | No description |
PRINTS | PR00615 | 3.4E-15 | 127 | 145 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MDNGSHDGGS GNVGFHSYRR SPRPISAPAP APSSAMETNM GLPARLNQAI TECIIREQDR 60 FMPIANVVRI MRRILPSHAK ISDDSKQLIQ ECVSEFISFI TMEANDRCKH EQRKTITAED 120 ILWAMSKIGL DDYIEPLTLY LQRYREFDYA EGGSMSGEPL PLKHPMAHHH GYFVHPPGNA 180 RTSQSAVAAV NSEVESPPEE GKE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 6e-55 | 55 | 146 | 6 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010320573.1 | 1e-103 | nuclear transcription factor Y subunit B-6-like | ||||
Swissprot | Q84W66 | 1e-59 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | M1B1U5 | 1e-93 | M1B1U5_SOLTU; Uncharacterized protein | ||||
STRING | Solyc05g005380.1.1 | 2e-99 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 1e-59 | nuclear factor Y, subunit B6 |