PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08951.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 374aa    MW: 43271.8 Da    PI: 4.4304
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08951.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.72.2e-34141062103
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl k ye++ede+++ lisw+++++sf+++d  +f++++LpkyFkhsnf+SF+RQLn+YgF+k ++++         weF ++sF 
  Sme2.5_08951.1_g00003.1  14 FLLKCYEMVEDESTDGLISWNQSQKSFIIWDVPKFSSELLPKYFKHSNFSSFLRQLNIYGFHKADTDR---------WEFFNDSFL 90 
                              9***************************************************************9999.........********* PP

                              XXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkkse 103
                              kg+k+ l++i r+k++
  Sme2.5_08951.1_g00003.1  91 KGQKHFLKNIVRRKQS 106
                              ************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.6E-4910103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.81E-3210103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-3510103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.8E-171437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.4E-2914103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-175264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-176577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MVKSFEDGVS VAPFLLKCYE MVEDESTDGL ISWNQSQKSF IIWDVPKFSS ELLPKYFKHS  60
NFSSFLRQLN IYGFHKADTD RWEFFNDSFL KGQKHFLKNI VRRKQSSVVL KKPSQLEKTK  120
SCTSEENKCL ELQKEVENLK YERNVLMQEL LKLKEHQQIS ESQLILLREQ LEVREKNQQQ  180
MLSFIVMAMQ SPSFLVQFFQ PKEKNWHLNE NGNNILSEVE DDCEDMPSDG AIVRYHPPTH  240
EEAGETSLCG EPEPALSMQK PIEMDVSSNE IKDLFSNIDF FSGLMDEKLL SFENRVPLTL  300
PYFPDDDDLL EQLLLSSPIT ENREGKGIYN NKACSDAAME TELSSQPEPI ESGTFVGPEE  360
PFYSMEDKKD GYTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-211010816124Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0142300.0BT014230.1 Lycopersicon esculentum clone 133429F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340011.10.0PREDICTED: heat stress transcription factor A-8
TrEMBLM1BH270.0M1BH27_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000450890.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122352222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.15e-76heat shock transcription factor A8