PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08854.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 666aa    MW: 77289.6 Da    PI: 4.9109
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08854.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.44.4e-121196299
                             EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                       B3  2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                             fk      ++k+g l +p  f+ ++ +g    +++  +  + g++W vk   ++++   + ++ WkeFv++ +L+ gD++vFk++g++
  Sme2.5_08854.1_g00002.1 11 FKPI--LPSFKNG-LKIPIGFL-KYlKGH--DDIEHAILRRGGKKWLVKA--NGRR---LEEGDWKEFVEELNLELGDILVFKHEGKM 87
                             5666..5667777.********.664544..567889999**********..7777...67888*******************99989 PP

                             EE..EEEEE-S CS
                       B3 89 efelvvkvfrk 99
                             ef   v+vf++
  Sme2.5_08854.1_g00002.1 88 EF--EVSVFDS 96
                             99..9999986 PP
2B345.71.1e-14212297590
                              -..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                       B3   5 ltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                              +++ + l+++ +++pk+fa+++   +g+k+++  +++  ++ rsW++ l+ +k++   + ++GW++F  +n LkegD  +F+ + +
  Sme2.5_08854.1_g00002.1 212 TIRQYCLSRDFMWIPKHFASANgliKGNKKCG-LIIIDERKTRSWNLMLTSNKTQV-RINGDGWRKFSADNYLKEGDHTMFEIVTN 295
                              56789999**************9987777776.777777999*******5444444.45689********************7764 PP

                              SEE CS
                       B3  88 sef 90 
                               ++
  Sme2.5_08854.1_g00002.1 296 -GE 297
                              .33 PP
3B3482.2e-15450531590
                              -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                       B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                              ++++++ ++  l+lp +f++++g+     ++++l d + rsW+v +  +k++ ++ +++GW +F +angL++gD+  F+l++ +++
  Sme2.5_08854.1_g00002.1 450 TIKPYTISNPVLYLPLDFVKSNGLMR--RREMILVDGKQRSWSVCI-GQKGRHHFGIKRGWTQFRNANGLQVGDTYKFELTN-NGT 531
                              56889999999***********9984..458*************99.4555566999**********************976.444 PP
4B346.66e-15555636590
                              -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                       B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                              ++++++ +++ l+lp +f++++g+ +++  +++l d + rsW+v +   + +++ +  ++GW +F +ang+++gD+  F+l+++ +
  Sme2.5_08854.1_g00002.1 555 TIKPYNISKSVLYLPLDFVKSNGLMHRR--EMILVDGKQRSWSVCV--GRMDCHhFGVKSGWTQFRNANGVQVGDTYKFELINN-G 635
                              568999999*************999766..8***************..66666658899*********************9974.3 PP

                              E CS
                       B3  90 f 90 
                              +
  Sme2.5_08854.1_g00002.1 636 T 636
                              3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-18399IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-18399IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.492797IPR003340B3 DNA binding domain
CDDcd100171.57E-12895No hitNo description
SMARTSM010199.1E-151097IPR003340B3 DNA binding domain
PfamPF023625.3E-91696IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-14206304IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-14207304IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.857208306IPR003340B3 DNA binding domain
SMARTSM010194.7E-10209306IPR003340B3 DNA binding domain
PfamPF023622.4E-12212300IPR003340B3 DNA binding domain
CDDcd100177.76E-8216291No hitNo description
Gene3DG3DSA:2.40.330.106.9E-18442536IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-18444537IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.872446540IPR003340B3 DNA binding domain
SMARTSM010195.1E-15447541IPR003340B3 DNA binding domain
PfamPF023622.9E-14450536IPR003340B3 DNA binding domain
CDDcd100177.70E-13451538No hitNo description
Gene3DG3DSA:2.40.330.106.9E-18548643IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-18549643IPR015300DNA-binding pseudobarrel domain
CDDcd100178.60E-14551644No hitNo description
PROSITE profilePS5086312.308551645IPR003340B3 DNA binding domain
SMARTSM010191.8E-14552645IPR003340B3 DNA binding domain
PfamPF023629.5E-14555641IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MEIPPKKPHF FKPILPSFKN GLKIPIGFLK YLKGHDDIEH AILRRGGKKW LVKANGRRLE  60
EGDWKEFVEE LNLELGDILV FKHEGKMEFE VSVFDSSHCD REYVEYMQME EEEGEDMKDE  120
DNKEQDDHED EEEDELDVEE DEEEDEEEEE EDMVDEDEDD ENDEDEDEDD EDDDDDEDED  180
EYEDENDEDT DEEGEEAATH DKPLGQSHFE CTIRQYCLSR DFMWIPKHFA SANGLIKGNK  240
KCGLIIIDER KTRSWNLMLT SNKTQVRING DGWRKFSADN YLKEGDHTMF EIVTNGETPI  300
WKFRVVMDVE TPTRKFQGNF FLRLCVKLTN ATDKPKAKIK TSGKAFSNVE AAKDMHLSDH  360
SHFICTIKHY CLSKHFLCVP KQFARENRLE NRKYLRGSPS IQPEVKKKKS DAERMSLDKG  420
LERKNLGATT LKSQLASSTS VDANSHFIST IKPYTISNPV LYLPLDFVKS NGLMRRREMI  480
LVDGKQRSWS VCIGQKGRHH FGIKRGWTQF RNANGLQVGD TYKFELTNNG TIPIVHFHYL  540
RGSPSVDVNS HFISTIKPYN ISKSVLYLPL DFVKSNGLMH RREMILVDGK QRSWSVCVGR  600
MDCHHFGVKS GWTQFRNANG VQVGDTYKFE LINNGTIPIV HFHCECYFFI MFPFTACLDG  660
GFPWYG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.13e-32B3 family protein