PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08483.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 239aa    MW: 26401.3 Da    PI: 10.6093
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08483.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.88.2e-20124157134
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                              C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Sme2.5_08483.1_g00001.1 124 CTHCEVTKTPQWREGPLGPKTLCNACGVRYRSGR 157
                              *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.7E-16118168IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.358122154IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-15123181No hitNo description
CDDcd002021.19E-16123180No hitNo description
Gene3DG3DSA:3.30.50.101.7E-14123155IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.2E-17124157IPR000679Zinc finger, GATA-type
PROSITE patternPS003440124149IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MKLTDVQGTG TFQTQSPVSV LEGSNSSSGG KSISIKHDPV IPVRPRSKRA RPSAVNPWVL  60
MAPISSTRAA SRKASDARKG KEKKRRLSLL SGAKESMKTY AQQIDDDTVL QINKSQQPSF  120
VKKCTHCEVT KTPQWREGPL GPKTLCNACG VRYRSGRLFP EYRPAASPTF VPSVHSNSHR  180
KVIEMRKKSV YGATEVEEPQ KVIMGRKREA LPEPTIVADP SMSPAPEFVP MSSYLFDVY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17186RKASDARKGKEKKRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00047PBMTransfer from AT1G08000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755231e-128HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340186.11e-146PREDICTED: GATA transcription factor 11-like
TrEMBLM1AE861e-145M1AE86_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000208761e-146(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08000.25e-42GATA transcription factor 10