PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08464.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 363aa    MW: 41244 Da    PI: 7.5782
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08464.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.54.6e-1179109333
                              XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee 33 
                              ++k++rr+++NReAAr+sR RKka++++Le+
  Sme2.5_08464.1_g00002.1  79 SDKVQRRLAQNREAARKSRMRKKAYVQQLET 109
                              79***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.2E-677137IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.5E-977121No hitNo description
PfamPF001701.1E-779111IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.00279123IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.81E-781116No hitNo description
PROSITE patternPS0003608499IPR004827Basic-leucine zipper domain
PfamPF141446.0E-29167240IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNMTSPTTQF APTRRMGIYE PFHQMSAWED AFRGDIMPSA DACMVSQLND KPDDKSGYTS  60
GEQHMPSGSG DNQALRSSSD KVQRRLAQNR EAARKSRMRK KAYVQQLETS RLKLAQLELE  120
LERARQQGLY MLGSNSNMGL LGTINPGITA FEMEYSHWVE EQQKKNAELR SILQSPVSDM  180
DLQLLVENVL SHYFNLFRMK AEAAKADVFY LMSGMWRTSV ERFFLWIGGF KPSELINVVM  240
PQLEPLTDQQ IIKVCNLRHC CQQAEDALTQ GMDKLQQTLA QSILNMNTGA GNYTSQMVSS  300
MENLEALESF VNQADHLRQQ TLQQMSIILT KHQAARGLLA FGEYVQRLRA LSSLWAARPR  360
EPT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00502DAPTransfer from AT5G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0142160.0BT014216.1 Lycopersicon esculentum clone 133394F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237865.10.0transcription factor TGA1 isoform X2
RefseqXP_010320138.10.0transcription factor TGA4 isoform X1
RefseqXP_010320139.10.0transcription factor TGA1 isoform X2
SwissprotQ391621e-153TGA4_ARATH; Transcription factor TGA4
TrEMBLA0A3Q7G6X70.0A0A3Q7G6X7_SOLLC; Uncharacterized protein
STRINGSolyc04g072460.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-143TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]